| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4050 |
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| Symbol | |
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| ID | 8227648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 4899504 |
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| End bp | 4901216 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644931893 |
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| Product | single-stranded-DNA-specific exonuclease RecJ |
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| Protein accession | YP_003088418 |
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| Protein GI | 255037797 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
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| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000178442 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTGAAA AGCGCTGGAT ACACCACCCT CCCTTTACCT CTGAACAAGA ACAGGTTGCG
CAGAGCCTTG CCGAATCTTT GAAAGTAAGT CCCTCGCTGG CAACGCTTTT GGTTCAGCGC
GGCATTCTCG ATTTCGATCA ATCCCGCGAT TTTTTCCGCC CCGACATCCG GCATTTGCAC
GATCCTTTCC TGATGGCCGA CATGGAGAAA GCCGTCGAGC GTTTGATCAA AGCCATTGAT
TCAAATGAGA AAATACTGGT TTACGGAGAT TACGATGTGG ATGGCACCAC GTCCGTCGCA
CTCTTCTATG GTTTTCTCAA AAGAATTTAT CCCAATCTCG ACTACTACAT TCCCGACCGC
TACGAGGAAG GCTACGGCGT TTCGTGGCAA GGCGTGGAAT GGGCGCATGC CAATGGCTAT
ACATTAATAG TAACCCTCGA CTGCGGCGTC AAATCTGTGG ACAAGGTTAC CGCCGCCCTC
GAGAAAGGCA TCGACTTCAT TATATGCGAC CACCACCGCC CCGGCGATGA GCTTCCGCCT
GCCGCCGCGG TGCTCGATCC GAAGCGCGAG GATTGTTTGT ATCCTTATAA AGAGCTCACC
GGCTGCGGCG TCGGATTCAA ATTATTGCAG GCATTTTGTG TCAAGCAGGT CCTCGATCCC
GAGACGTTGT ACGATTACCT GGACTTGCTG GTGGTCAGCA TCGCATCCGA CATTGTGCCT
ATTACCGGCG AAAACCGCGT GCTGGCATTC TACGGCTTGC AAAGACTGAA TGCACAACCG
CGGACGGGCA TTAAAGCATT GATCCAGATT TCCGGGATGA CTGGCGCGCT CGACATTACG
AATGTCGTTT TCGGTCTCGG GCCGCGCATT AATGCCGCCG GGCGTATCAA GCACGCCAAG
GAAGCTGTAA GATTGCTGCT TTCCGAAATC GAGGAAGAAG CCATTTCATT CGCCGAAGAA
ATCAACAAGC ATAACAGCGA GCGCCGCAAC TTCGATTCGA GCATTACCGA GCAGGCGCTT
TTTATGATCG AAAACGACGA ATGGTTTTCG AATGCAAAAA GTACCGTATT ATATAAGGAA
GACTGGCACA AAGGCGTGAT CGGCATTGTG GCCAGCCGCT GCATTGAAAA ATACCACCGC
CCGACTATTA TCCTCACGCA TTCGCACGGA AAAGCCGCCG GTTCTGCACG CTCGGTGCCG
GGTTTCGATG TGTACGAGGC GATCGAGGAA TGCGCGGATC TTTTGGAACA ATATGGCGGG
CACACTTTTG CTGCGGGGCT CACATTGCCG CTCGATAATG TGGAAGCATT TAAAATGCGA
TTTAATGAAA TCGTGAGTAG CCGCATTCAG CCCGACCAGC TCGTGCCGAT GATCAATGTG
GATATGCTGC TGGAACTGGA AGCGATTACG CCTAAGTTTT ATAATATCCT TCGCCAGATG
GGGCCGTTCG GGCCGGGGAA CATGACGCCG GTTTTCGAGT CACGCAATAT GACGCTCGTC
GGTCGGCCGA TGTTGATGAA GGAAAAGCAT ATCAAATTTG ACGTGAAGCA AAACAACTCG
GCGGTATTTA CGGCCGTGGG CTTCGGAATG GGGCATTTTT ATCCTGATAT CGTCAATGGA
AGGCCGTTCT CGATCTGCTA TTGCCTCGAA GAGAACCATT TCCGTGACAA GAAAACCTTG
CAGCTGTCGT TGAAAGACAT TAAGCTGCAT TAA
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| Protein sequence | MIEKRWIHHP PFTSEQEQVA QSLAESLKVS PSLATLLVQR GILDFDQSRD FFRPDIRHLH
DPFLMADMEK AVERLIKAID SNEKILVYGD YDVDGTTSVA LFYGFLKRIY PNLDYYIPDR
YEEGYGVSWQ GVEWAHANGY TLIVTLDCGV KSVDKVTAAL EKGIDFIICD HHRPGDELPP
AAAVLDPKRE DCLYPYKELT GCGVGFKLLQ AFCVKQVLDP ETLYDYLDLL VVSIASDIVP
ITGENRVLAF YGLQRLNAQP RTGIKALIQI SGMTGALDIT NVVFGLGPRI NAAGRIKHAK
EAVRLLLSEI EEEAISFAEE INKHNSERRN FDSSITEQAL FMIENDEWFS NAKSTVLYKE
DWHKGVIGIV ASRCIEKYHR PTIILTHSHG KAAGSARSVP GFDVYEAIEE CADLLEQYGG
HTFAAGLTLP LDNVEAFKMR FNEIVSSRIQ PDQLVPMINV DMLLELEAIT PKFYNILRQM
GPFGPGNMTP VFESRNMTLV GRPMLMKEKH IKFDVKQNNS AVFTAVGFGM GHFYPDIVNG
RPFSICYCLE ENHFRDKKTL QLSLKDIKLH
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