Gene Dfer_4049 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4049 
Symbol 
ID8227647 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4898753 
End bp4899484 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content51% 
IMG OID644931892 
ProductABC transporter related 
Protein accessionYP_003088417 
Protein GI255037796 
COG category[R] General function prediction only 
COG ID[COG1137] ABC-type (unclassified) transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000937515 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATACTAA GAACCGTAAA CCTCGTGAAG AAATACGGGG TTCGACTTGT TAATAATAAT 
GTAAGCTACC AGGTCGAGCA GGGCGAGATC GTGGGGCTGC TGGGGCCGAA TGGCGCGGGC
AAAACGACTT CCTTTTATAT GGCCGTTGGA TTGGTGAAAC CGAACAGCGG AAATGTGTAC
CTCGACGATA AGGACATTAC CAACCTGCCG ATGTACAAGC GCGCGCGCCT GGGCCTGGGC
TACCTCGCGC AGGAAGCGTC GGTTTTCAGG ACATTGACGG TCGAAGAGAA CATCAAAGCC
GTTCTCGAAA TGACCAATCT TTCGAAAGCC GATCAAAAAC AGAAGGTAGA GGAGCTGATC
GAGGAATTTC ACCTCGGGCA CGTTCGAAAA AGCAAGGGTA TGGTCCTTTC GGGAGGTGAG
CGCCGCCGTA CGGAAATTGC AAGGTCACTG GCCGTAGACC CGAAGTTCAT TCTACTCGAT
GAGCCTTTCG CGGGTGTGGA CCCCATTGCC GTGGAAGATA TTCAAAGTAT TGTAGCCAAG
CTGAAACACA AAAACATCGG CATCCTCATC ACGGACCACA ATGTAAACGA GACGCTATCG
ATCACCGACC GTGCATATCT GCTGTTTGAA GGAAAAATTT TGAAACAAGG CACTGCCGAA
GAATTGGCGG AGGACGAAGT GGTGAGGCGC GTGTACCTGG GACAGAATTT CGAGTTGAAG
CGGAAGATCT GA
 
Protein sequence
MILRTVNLVK KYGVRLVNNN VSYQVEQGEI VGLLGPNGAG KTTSFYMAVG LVKPNSGNVY 
LDDKDITNLP MYKRARLGLG YLAQEASVFR TLTVEENIKA VLEMTNLSKA DQKQKVEELI
EEFHLGHVRK SKGMVLSGGE RRRTEIARSL AVDPKFILLD EPFAGVDPIA VEDIQSIVAK
LKHKNIGILI TDHNVNETLS ITDRAYLLFE GKILKQGTAE ELAEDEVVRR VYLGQNFELK
RKI