| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3919 |
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| Symbol | |
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| ID | 8227514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 4763668 |
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| End bp | 4765335 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644931760 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_003088288 |
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| Protein GI | 255037667 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAAACA GAAATAACTC CCGAGGCGGA AACAGTTCCC GCCCGTCAGC CGGTGGCTCC
AAAGGCGGAG GCGGCTTCTT CAAACGTGCT AAACCCGAGG TAGAAAGTCG GTTTAGCAAG
CCCAGCATTA AAAAATCCAG TCTGAAATTC TCCGCTTCGG CCGATAACAA AGGTCAGAAA
GCACGCCCGA GCTTCGATCA TGAGAAGCCA AGGGAAGATC GTGGGGCCTT TGATAAGCCG
CGTTTCGACA AGCCTGGCTT TGGCAAACCC GATTTCAAGA AATGGGATAA AGGCGGCAAC
GATCGCCCGT TCCGTCGCGA AGGCGATTCT GCCGAGCGTG GTTTCAAGAA GGATTTTGGT
AAAAAAGATT TCCGTTCCGG CGACCGCTTC GGCGACAGAA AACCATTCGG CGACCGTCCC
GAAAGAGGCG GCTTCGGCGG AGAGCGTAAC CGCGAGTTCA AACCGCGTTT CGACCGGGAT
AACGACGAGC GCGAGTTCAG ACCACGTCCG GACAGAGATT CCCGCGATTT CAAATCCCGC
CCTGAAAGAG GTAATGGCGA TCGCGAATTC AAGCCTCGTT TAGATAAAGA CAACGGTGAC
CGTGAGTTCA AACCTCGTTT CGATAGAGAA AGCGGCGATC GCGAATTTAA ACCACGATTT
GAAAGAGACG GCGGCCGCGA GTCCAAGCCG GGCTTTGATA AGCCGCGATT CGAAAGAGGT
GACCGCGATG CAAGATCGGA CAGGCCTTCG CGCTCATTTG ACCGTAGCGA AGGCTCTTTT
AAAAAAAAAG AAGATAGGGA CGAAAAGCCT TACCGCTCCC GTTTCCAGGA CGAAGAAGAG
CAGGACCGCA GCGGGTTGGA GAGACGAGTA GGACGGTACG AAACGGCACC GCGCTACAAT
CTTGACAATT ACGAGCAAAA AAAGAAGCCT TCGGCAAGAC ATAAGGACAA GGAGGAAACC
GACGAGATCC GCCTGAACCG CTACATTGCT AATGCGGGCA TTTGCTCACG CCGAGAGGCC
GACGACCTGA TTTCTTCCGG CCAGATTTCG GTGAATGGCA AGATCGTCAC TGAAATGGGT
TATAAAGTGC GCCCGACCGA TGTGGTGAAA TACGGCAAGA AAGCATTGAA CCCGGAGAAA
ATGGTGTACA TTCTCATCAA CAAACCGAAG GATTACATCA CCACCACCGA CGATCCCGAA
GAGCGCAAAA CGGTGCTCGA CATTATCGCC GGCGCATGCT CCGAGCGCGT GTACCCCGTA
GGCCGCCTCG ACCGCAATAC CACCGGGCTG CTGTTGCTCA CCAATGATGG TGAACTGGCC
GAAAAGCTGA CGCACCCTTC CAGCGGCATC AAGAAGATCT ACCAGGCCGA ACTCGACAAG
CCGATTACGA CTGAGGATTT TGAGCAGCTG AAAGCCGGAG TGGAACTGGA AGACGGTTTC
ATCCGCCCCG ACGAAGTAGG TTTGGTAACG CCAGACGCGC AGGTGGTGGG CCTTGAAATC
CACAGCGGCC GCAACCGCAT CGTTCGCCGG ATGTTCGAAC ACCTGGGCTA CGAAGTTCAG
AAACTCGACC GTACTGTTTT CGCAGGTTTG AACAAAAAGG ATTTGCCACG TGGTAAATGG
CGCTTCCTGA CGGAAAAAGA GGTGATAAAA CTGAAATTCC TGCTTTAA
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| Protein sequence | MRNRNNSRGG NSSRPSAGGS KGGGGFFKRA KPEVESRFSK PSIKKSSLKF SASADNKGQK
ARPSFDHEKP REDRGAFDKP RFDKPGFGKP DFKKWDKGGN DRPFRREGDS AERGFKKDFG
KKDFRSGDRF GDRKPFGDRP ERGGFGGERN REFKPRFDRD NDEREFRPRP DRDSRDFKSR
PERGNGDREF KPRLDKDNGD REFKPRFDRE SGDREFKPRF ERDGGRESKP GFDKPRFERG
DRDARSDRPS RSFDRSEGSF KKKEDRDEKP YRSRFQDEEE QDRSGLERRV GRYETAPRYN
LDNYEQKKKP SARHKDKEET DEIRLNRYIA NAGICSRREA DDLISSGQIS VNGKIVTEMG
YKVRPTDVVK YGKKALNPEK MVYILINKPK DYITTTDDPE ERKTVLDIIA GACSERVYPV
GRLDRNTTGL LLLTNDGELA EKLTHPSSGI KKIYQAELDK PITTEDFEQL KAGVELEDGF
IRPDEVGLVT PDAQVVGLEI HSGRNRIVRR MFEHLGYEVQ KLDRTVFAGL NKKDLPRGKW
RFLTEKEVIK LKFLL
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