| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3678 |
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| Symbol | |
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| ID | 8227263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 4476995 |
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| End bp | 4478308 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644931510 |
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| Product | threonine dehydratase |
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| Protein accession | YP_003088048 |
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| Protein GI | 255037427 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form
[TIGR02079] threonine dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.376781 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.173616 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCACACCA AAATACAGGG CTTTACGATT TTCGTAAAGC TCTTTTCATT GAATCCTATG
AGCACTGCCC ATCCACTTCC GACTCTCGAT AACATCTTCC TCGCCGCCGA GCGCCTGCGC
GGGGTGATCA ACCACACACC GATATTTTAT AATGCACACC TTTCGGAGCA GTACGGGGCC
AATGTTTATC TCAAAAGAGA GGACCTCCAA ACCGTCCGCT CCTACAAAAT CCGCGGAGCC
TATAACAAGA TGGCCAGCCT CACGCCCGAA GCCCTCGCGG GCTGGATCGT GTGTGCGAGT
GCGGGCAACC ACGCGCAGGG CGTAGCGTAC GCATGCCGCA AAATGCAGGT GAAAGGCGCG
ATTTTCATGC CTACCACTAC GCCGGCGCAA AAAGTAAAGC AAGTGCGGCT TTTCGGCCAG
GAATGGATTG AAATCCATTT GGTAGGGGAC ACTTATGACG ATGCTTACCA TGCTTCGATG
GCTTACCGCG ACAGCACGAA TGCGGTTTTT GTGCATCCAT TTGATGATTT GCAGGTGATA
GAAGGGCAGG GGACCGTAGG GCTGGAAATT TTCAAAGATG CAGATTTTAA AATCGACTAT
CTGCTGATGG CCATTGGCGG AGGCGGATTA GCATCCGGCA TCTCCACTGT TTTCAAACAG
CTTTCGCCCA AAACCCAGCT CATCGGCGTG GAGCCGGAAG GTTCGCCTAC GATGCACAAG
TCCATCCAGG AAGGGCACGT GGTGACGCTG GATAACATCG ACAAATTCGT CGACGGCGCG
GCGGTAAGGC GGGCGGGGGA CCTTACATTT GATATTTGCA GCAAAAGCCT GAATCAAATA
CTTCTCGTGC CGGAAGGCAA AGTCTGCTCC TCCATTTTGC AGCTTTACAA TGAAGAAGCG
ATCGTGGCCG AGCCGGCGGG CGCCTTAACG GTATCTGCAT TGGATTTAAT TCGGGAAGAT
ATCAAGGGGA AAAACGTAGT TGTACTCATC AGCGGCGGGA ATAACGACAT TACCCGCACG
GAGGAAATCA AGGAACGTTC ATTGCTCTAC GAAGGTTTGA AGCATTACTT CATCATCCGC
TTCCCGCAAC GCTCCGGCGC ATTCCGGGAG TTTTTGAATG TGCTCGGTCC GAATGACGAC
ATTGCGCGTT TTGAATACGT GAAAAAGACG AACCGCGAGC AGGGACCGGC ATTGGTCGGC
ATCGAGCTGA AAAGCCGCGA GGACTTCGCG CCTTTGATCG AGCGAATGGA TGCGAACCGG
GTGGTTTATG AGTATCTGAA TGATCAGCCG GATTTGTTTC AGTTTATGGT TTAA
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| Protein sequence | MHTKIQGFTI FVKLFSLNPM STAHPLPTLD NIFLAAERLR GVINHTPIFY NAHLSEQYGA
NVYLKREDLQ TVRSYKIRGA YNKMASLTPE ALAGWIVCAS AGNHAQGVAY ACRKMQVKGA
IFMPTTTPAQ KVKQVRLFGQ EWIEIHLVGD TYDDAYHASM AYRDSTNAVF VHPFDDLQVI
EGQGTVGLEI FKDADFKIDY LLMAIGGGGL ASGISTVFKQ LSPKTQLIGV EPEGSPTMHK
SIQEGHVVTL DNIDKFVDGA AVRRAGDLTF DICSKSLNQI LLVPEGKVCS SILQLYNEEA
IVAEPAGALT VSALDLIRED IKGKNVVVLI SGGNNDITRT EEIKERSLLY EGLKHYFIIR
FPQRSGAFRE FLNVLGPNDD IARFEYVKKT NREQGPALVG IELKSREDFA PLIERMDANR
VVYEYLNDQP DLFQFMV
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