| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3624 |
|---|
| Symbol | |
|---|
| ID | 8227209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4419998 |
|---|
| End bp | 4420693 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644931456 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
|---|
| Protein accession | YP_003087994 |
|---|
| Protein GI | 255037373 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.795882 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.707115 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATACA AGCATATCTT CTTCGATTTG GACCACACAC TTTGGGATTT TGAAAGAAAT
TCATCCGAGT CTCTCGAAGA AATTTTCCAC CACCACCAGC TCACAAGGTA CGGAATCAGC
TCCTGCGACG ATTTTGTGTG TTCTTTTCTC AAAATCAACT CCGCATTGTG GGATGCATTC
GACCGCGGAC AGTTGCACCA TAGCTATATA CGTGAGAACC GCTTCCGGAT GGTATTTGAA
GAACTCGGTG CCGAATGTCC GCCAGAACAC GCGGCAATCG GGGAGTTTTA CCTGACTTCG
CTTCCGACTA AGAAACACCT GCTCGAAGGC GCCCTCGATT TGCTGAACTA CGTGTCGCAG
GCAGGTTACG GCATGCATAT CATCACCAAT GGATTCAATG AAGTACAGGC AAGGAAGATC
GCCAGCTCGG AAATCGGCCA TTTTTTTGAA AATGTGGTGA CTTTCGAAAC CGCGAATGCG
AAAAAGCCCG AGCGCCGGAT TTTCGAGTTT GCCCTGGACA TTGCCGGCAC GACCGCGTCG
GACAGCCTCA TGGTGGGCGA TAACTGGATC GCCGACATCC TCGGCGCAAA GCAAGTCGGG
ATGGATACGG TGTATCTCAA TCCGGCCGGA CTGCAATTTG ACGAGCAGCC TACATTTAAT
ATCCGGCGAC TCGAAGAGTT GATGCTGATT CTCTGA
|
|---|
| Protein sequence | MKYKHIFFDL DHTLWDFERN SSESLEEIFH HHQLTRYGIS SCDDFVCSFL KINSALWDAF
DRGQLHHSYI RENRFRMVFE ELGAECPPEH AAIGEFYLTS LPTKKHLLEG ALDLLNYVSQ
AGYGMHIITN GFNEVQARKI ASSEIGHFFE NVVTFETANA KKPERRIFEF ALDIAGTTAS
DSLMVGDNWI ADILGAKQVG MDTVYLNPAG LQFDEQPTFN IRRLEELMLI L
|
|---|
| |