| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3605 |
|---|
| Symbol | |
|---|
| ID | 8227190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4403780 |
|---|
| End bp | 4405090 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644931439 |
|---|
| Product | MiaB-like tRNA modifying enzyme YliG |
|---|
| Protein accession | YP_003087977 |
|---|
| Protein GI | 255037356 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.757621 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCA AAGGAATAGT TAAGAATAAG GTCAATATCG TGACGCTGGG TTGTTCCAAA
AACCTGGTCG ACTCGGAGGT GCTGTACACG CAGCTCAAAG GCAACGGGTT TGCGGTTGAC
CACGAATCCA AAAAGGATGA TTCGCAGATT GTCGTGATCA ATACCTGCGG GTTTATCGAC
AATGCGAAGG AAGAATCTAT CAACACCATT TTGCGCTACG CCGATGCCAA AGCGGCAGGG
ATGGTAGATA AAGTGTATGT GACAGGCTGC CTGTCGCACC GGTACAAGGA TGAACTTTCG
GTTGAAATAC CTACCGTAGA CGCCTGGTTC GGGACCAACG AGCTGCCCCG CCTGCTCAAA
ACCCTCAAAG CAGACTACAA ACACGAGCTC GTGGGCGAGC GCCTGCTCAC CACGCCTGCG
CATTATGCCT ACCTGAAAAT CGCCGAAGGC TGCGACCGCC CGTGCTCGTT CTGCGCCATC
CCGCTCATGC GCGGAGGCCA CGTGTCACGG TCGATCGAAG ATCTGGTGAA AGAAGCGAAA
TCGCTTGCCA AACGCGGAAC TAAAGAGCTT ATTCTCATTG CCCAGGACCT GACTTACTAC
GGCCTGGATA TTTACAAAAA ACGCAATCTT TCCGACCTGC TCCGTAACCT TTCCGACGTG
GAGGGCATCG AGTGGATTCG CCTGCAATAT GCCTATCCGG CCGGGTTCCC GATGGATGTG
CTGGATGTGA TGAACGAGCG CAGTAACATT GCCAAATACC TCGATATGCC GCTCCAATCG
GGCTCGACGG AAATGCTGAA ACTCATGCGC CGCGGCATTA CCCGCGAAAA AACGGAAGCG
CTCATCCATT CGATCCGTGA CAAAGTGCCT GATATCGCGT TGCGTACGAC ACTGATCGTC
GGACACCCTG GCGAAACGGA AGAATTGTTT GACGAGACCT ACGAATTCGT TGAAAAAATG
CGTTTCGACC GCCTGGGGGC ATTCCAGTAC TCGCATGAGG ACAATACGCA TTCATTCTCG
ATGGAGGACG ATGTGGAAGC GGAAGTGAAA CAGGAGCGCG CCGATGCCAT TATGGAATTG
CAGCAAGGCA TTTCGGCGGA GCTGAACCAG GCAAAAATCG GGAAGACATT CAAAGTCCTG
TTCGACCGTA AGGAAGGCGG CTATTTCATC GGCCGCACGG AATTCGATTC ACCCGAGGTG
GATAACGAAG TACTCGTTCT GGCGAGCCAA TATGTGCGCC TGGGCGATTA TGCGCAGGTA
AAAGTGACGT CGGCGGAGGA ATTTGACCTT TATGGTGAAG TGATTTCCTG A
|
|---|
| Protein sequence | MKTKGIVKNK VNIVTLGCSK NLVDSEVLYT QLKGNGFAVD HESKKDDSQI VVINTCGFID
NAKEESINTI LRYADAKAAG MVDKVYVTGC LSHRYKDELS VEIPTVDAWF GTNELPRLLK
TLKADYKHEL VGERLLTTPA HYAYLKIAEG CDRPCSFCAI PLMRGGHVSR SIEDLVKEAK
SLAKRGTKEL ILIAQDLTYY GLDIYKKRNL SDLLRNLSDV EGIEWIRLQY AYPAGFPMDV
LDVMNERSNI AKYLDMPLQS GSTEMLKLMR RGITREKTEA LIHSIRDKVP DIALRTTLIV
GHPGETEELF DETYEFVEKM RFDRLGAFQY SHEDNTHSFS MEDDVEAEVK QERADAIMEL
QQGISAELNQ AKIGKTFKVL FDRKEGGYFI GRTEFDSPEV DNEVLVLASQ YVRLGDYAQV
KVTSAEEFDL YGEVIS
|
|---|
| |