Gene Dfer_3542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3542 
Symbol 
ID8227127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4326115 
End bp4331574 
Gene Length5460 bp 
Protein Length1819 aa 
Translation table11 
GC content53% 
IMG OID644931377 
Productalpha-2-macroglobulin domain protein 
Protein accessionYP_003087915 
Protein GI255037294 
COG category[R] General function prediction only 
COG ID[COG2373] Large extracellular alpha-helical protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGA CTGCCATCCT GTGTTCTTTT TGCGTTCTCT TTTTGGTCTG GGTTTTCACT 
AGCTGCTCTT CTTTCAACGA AATCCGCGTG GCGGGCACCA ACTTCACCGA GGAAGTGGGG
CAATCGCAAA ACCTCGTTTT TACATTTAAC AAAGACCTTG TTTCAACAGC CGAGCTGAAC
AGTTGGGACT CGACGCAATT CGTGACTTTC GAGCCGGCGG TGCGGGGGAA ATTCAAATGG
ACGGCACCCA ATGAGCTCGT TTTTTCGCCG GTGGCAGGCT TTGGAGCGGC CACTTCCTAC
AAAGCGCAGC TCACAGATCT GATCACTGAA AAGTCATACA AGGACAAGAA GTACAAACTT
TCCCAGGACC CGATCACATT CCACACACCA TATCTCCAAC TCGCCGAAAC GGAAAGCTGG
TGGACATTGT CATCAGAAAC AGGCCGGCAG GAAGCGCGGA TAAGGCTGCA TTTCAACTAC
CCGGTCAATG CACAGCATGT GGCCGAAAAA TTGAAGGTTT TGTCCGGAAA CCAGGCATTG
GAATACCGCA TTCTGCCCTC TCAGGACGAA TCGGCGGTGA CGCTGGCATT TGCGAAAGTG
GGTGCGGCCG ATAACAACGA AACGGCCGTC AATATCACCA TCGACAAGGG TGTGAAGGTG
CAAAATACCT CTTACAGCAG TCAGGAAGCA CTTTCAAAAA CAGTGAGCAT ACCTTCGCCG
CTTCATTTGG AAGTCGTGGA TATTAAAACC GGCTTTGAAA ACAATGCGGG CTACGCGAGG
GTGATCACCA CGCAGGAGCT GGACAAGGAA AGTATAGCGG GCAGCGTTGC CGTAAATCCG
GAAGCTGCGG TGGAAACGGA GCCTACCGAA AACGGTTTTA TCGTGCGCGG CGCATTCAAC
GAAACCGAAA CATATGTGCT GCAACTGAAA CAATCGCTGA AAGGAGTTTT GGGACAAACT
TTGGAGGAAG AAGCATCCCG TGACCTGTTT TTTGGGAAAA TGCCCGCGGC TATCTCCTTT
GCAAACAAGA AGGGCCTGTA CTTATCGACC AAAAGCTCCC GCAATATCGG CGTCAACATC
GTGAATGTGC CCAAAGTGCA GGTACGCATT TCGAAGCTGT ATGCGAATAA TATCCTGCAT
TATATTCACA ACAACCGCTG GAACGACTAC GCTTATGTGG GCGACGACTG GCAGCCTACC
GGCAATTTCA ATTACAGCGA CGACCGCGAA AGCCAGCTGA GCGATGTGAT CGTGAATAAG
ATTGTAGAAA CAGCAAATTT GTCCAAAAAC AAAGGCATTT CCGCATTGAA TATCGCATTG
CCCGACGATA ACAAACGGCA GGGCGTGTAC CTGGTAGCGG TGAATTCCGA GGAGGAAGCC
TACCTCGGCG CCACGAAACT CGTCTCCATT TCCGATATCG GCCTCATTGC GAAGCAGGGC
AAGGATGAAC TGTGGATTTT TGCCAATTCC ATCAAAACCA ACGAGCCGAT CAAAGACCTT
GAACTGACGG TGGTGAGCTC CAACAATCAA TCGGTGCATA CGTTCAAAAC GGACGCCGAC
GGCATTGCCC ACGTGGACAA GCTGAGCGAA AAAGCGCCGG GCTTCAAGGT CGCCATGATC
ACGGCCAGTA CCCAGGACGA TTTTAATTTC CTCTTACTGG AAGACTCGCA GGTGCTCACC
TCGCGCTTCG ATGTGGAGGG TTTGCGGGAC AATGCATCAG GCTATCAGGT GTTTATCTAC
GGCCAGCGCG ATATTTACCG TCCGGGCGAA ACCATGCATT TCAACACCGT GCTGCGGACG
CAGGATTGGA AAACAGCCGG GAAAGTACCT TTGAAACTGC GCTTGCTGAC CCCGAACGGC
CGGGAATTCA GGACGTGGCG GAAAACAACT AACGAACAAG GTGCGGTAGA ATCCGAAATC
CCGCTGGACG CAGGTGTGCT CACGGGCACG TATGTGCTCG AAGTATACAA TGCAAACGAG
GTGCTGCTCG GTTCGCAGGC GGTAAGCGTC GAGGAATTTA TGCCGGATCG CATTAAGGTA
GACCTCAGCA GGGCTGCGAA AGATTATATG TCGGGGCAAA AAGTGTCGCT CACGGCCACC
GCAATTAACC TTTTTGGTCC GCCCGCGAGC AACCGCAACT ATCAGATGGA TTTCCAGTTG
CAGCGTAAAG GGTTCACTGC CAAAGCATTT CCAGAATACA GTTTTAACAT ACCCGCGCAA
ACCGCATTCG AGCGCGACAG CCGCCAGGGC ATTACCAACG AACAGGGCCA GGCCAGCGAG
CAGTTTGCAT TGGCGGCCGG CTTGCAGGAT ATCGGCGTGC TGGAAGGCAA GATATACGTG
ACGGTGTTCG ACGAAAATGG CCGGCCCGTA AACAGGTTAC AGCGTTTCGA CGTGTACACG
CAGCCGGTGT TCTACGGCAT TCGCCTGCCC GACAGCTATG TAGGTACCAA TGCACCGGTG
CCGGTTGACA TTGTGGGGGT AGGAAAGAGC GGCGCGTTGC AGAACGGCGC AACGGCCAGC
ATCGAGGTGG TACGGCTTGA ATATCAGACG GTTGTTGAAA AGAAATATGA GCGCCTGCAA
TACACATCAC GTAAAAAAGA GAAATTGGTT TATTCCAACA AACTTACCCT GGCAGGCGGA
AAGGGCACTT TCCGCTATGT GCCCACGGTA TCGGGTGAGT ATGAAGTGCG CGTAAAACGC
CCCGGCGCTA CGCATTACAC GCTGGCCAAT TTTTATGCTT ACGGTTATGG ATATACCCAG
TATTCGTCGT TTGAGGTGAG CAATGAGGGC CAGGTACTGA TGGAAACCGA TAAGGACAGC
TACAAAATGG GCGAATCGGC CAGGGTGCTG TTCAAAACGC CGTTTGATGG ACGACTGCTG
GTAACCGTTG AGCGTAACAA TGTTTTGGAA CAGCATATCC TCACCACTGA AAAGAAAGCA
GCGGAACTGA CATTTAAAAT CAAAGAAGCG CACCTGCCCA ATGTATTCGT AACGGCGACG
CTCATCCGGC CGCTGGATGC GTCGAACATG CCGCTGACGG TCGCTCATGG CTTTCAGCCG
ATTGCGGTGG AGGACCCGGA CCGCAGGTTG CCGGTCAGCA TCACGGCAGT TGAAAAGTCG
AGATCGAAAA TGAAGCAGCA GATCAGGATC AAAACTGAAC CGAATGCGGA GGTGACGCTG
GCTATTGTGG ATGAAGGCAT TCTTCAGATC AAAAACTCCA AAACGCCGGA TATTCACGGT
CATTTCTACC AAAAACGGGC TTTGGAAGTG ACCAGCTACG ATTTGTACGC GCAGCTGTTC
CCGGAACTGT CGATCTCCGG CACATCGAGC TCGGGCGGTG ATGGCTACGA TCTGGAAAGG
AGGATTAACC CGCTAAGCAA TGGCCGGACG GAACTCGTGT CGTTTTGGAG CGGGCAGCTC
AAAGCCAATG GCAGCGGTGA TGTAACTTTC GATGTGAACA TCCCGCAGTT CAGCGGCGAC
TTGCGCATTA TGGCGGTCGC TTATAAAGAC AATGCATTTG GCTCCGCAAC CAAAAACATG
AAGGTAGCCG ACCCGATCGT GATCAGCGCC GGATTGCCGC GTTTCCTGAG CCCTGGTGAT
GAGCTTGTAC TGCCTGTGAA TATCAGCAAC ACGGAGGCGA AAGGAACTAC CGCCACGGTT
TCCGTACAGC TTGCAGGGCC ATTGGCAGCG GGACAGGCGC CGGTTACGCA AAATATCAGC
ATTCCGGCCG GGAAGGAAAG CAGGGCCGTT TTCTCCTTAA AAGCATTAAC GGCGATCGGC
GTGGGCAAGG TAACGGTGAA AGTGAATGCA TTCAAAGAAA CTTTCGTGAA TCAGACCGAG
ATTACCGTGC GGCCTGCGTC GCCCCTGCTG AAAACGAATG TGTCGGGACT TATTGCGGCC
GATAAACAGG GGCAGATTGA CCTTCGTTCG TCATTCATTC CTGCCACGGC AAGCAGCCAG
GTGGTTTTGA GCCGGTCGCC ATTGGTGCAG GGCGGAGGTA AGGCATTGTC AACATTGCTT
GGCTATCCTT ACGGCTGCCT GGAACAAACC GTGTCGAAAG CATTCCCGCA GATCTACTTC
GCCGACCTCA CCAAGGCCAT GGCAACGCCG GTTTATACGG TGAAAAGCGG TGAAAGTGAC
TTTAATCCGA TGACCAACGT GCAGCAGGCG ATCCGGAAAG TGGAATCGCA GCAACTGTTC
AACGGGGGAG TGGGCATGTG GCCGGGAGCT ACCCGGGAAG ACTGGTGGGC TACCGCTTAC
GCCGTTCATT TCCTGGAAGA AGCACGCAGG GCTGGGTTTG AGGTCAATGC CAAAACACTC
AGCCGGGCCG TCGAATACCT CACTGCCCAA AGCGGGACGA CGGCCAACAG GGAAGTGGTT
GTTGCCAGCA CCGGCAATGG CCTGGCTTAT GACGCGCAGC CTACGGGCAC CCAAACGCGC
AAAACAGTGG CACGCCGCGA GGCGATTTAC TCGCTTTATG TACTCGCCCT GAACGGCCAT
CCGAACCGGG CTTCGATGAA TTATTACAAA CAAAATCCGC ATTTGCTCAC GGCCGATTCA
AAATACCTGC TCGCAGGCGC ATTCCAGCTC GCGGGCGATG CGCGGAGCTT TAACGCGCTG
CTGCCCAGGA CGTATGTTGC CGAAAATGCT GGACGCTACA CAGACGACAG CTATTCGTCA
CCGCTTCGGA ATATGTCGTT GGTTTTGAAT ACATTAATCG AATCGGACCC GTCGAATGCG
CAGATTCAGG TGCTCGGGCG CCAGCTTTCA CAGGCCATCC AGTCGGCTTC GTATCTGAAC
ACCCAGGAAG CGGCATTTGC CGTACTGGCA TTGGGTAAGC TGGCCAGGAA AACGGCCAAT
TCTACCGTCA CGGCTTCGGT TTCTGCCAAT GGCAAGCCGC TCGGGCAGTT TACTGGTAAG
GAATTGAAAA TTTCGAAAGG CATTATAAAC CAGAAATTGC AGGTCAAAAC ACAGGGTAAG
GGCGATTTGT ACTGGTTTGC ACAAACGGCG GGCATGTCTG CGACGGGAAA CTATGTGGAG
GAAGACCAGG GAATCAGCAT TCGCCGCCAG TTCCTGACGC GCTCCGGTGC GCCTGTGCAA
TCTTTCAGGC AAAACGACCT GGTAGTAGTA AAGCTGACCC TTGCGAGCAC AAACGGCCTG
CCGGTGGAGA ACATTGTGGT AACAGACCTG CTGCCGTCCG GTTTTGAAAT AGAAAACCCC
CGCATTACCG AGCCGCGGGA TATGCCGTGG ATTACCAAAG CATCCGTCCC CGAATATTAC
GACATCCGCG ACGACCGCAT TCATTTCTTC ACCACGGCCG ACGCCCAGGA AAAGACCTTC
TACTACCAGG TCAGGGTAGT TTCAAAAGGA ACATTCACGG TAGGCCCGGC CGCTGCGGAT
GCAATGTACC AGGGAGAATA CCGCAGCTAT TCGGGTGGTG GGAAGATTAC GGTTGAATAA
 
Protein sequence
MKKTAILCSF CVLFLVWVFT SCSSFNEIRV AGTNFTEEVG QSQNLVFTFN KDLVSTAELN 
SWDSTQFVTF EPAVRGKFKW TAPNELVFSP VAGFGAATSY KAQLTDLITE KSYKDKKYKL
SQDPITFHTP YLQLAETESW WTLSSETGRQ EARIRLHFNY PVNAQHVAEK LKVLSGNQAL
EYRILPSQDE SAVTLAFAKV GAADNNETAV NITIDKGVKV QNTSYSSQEA LSKTVSIPSP
LHLEVVDIKT GFENNAGYAR VITTQELDKE SIAGSVAVNP EAAVETEPTE NGFIVRGAFN
ETETYVLQLK QSLKGVLGQT LEEEASRDLF FGKMPAAISF ANKKGLYLST KSSRNIGVNI
VNVPKVQVRI SKLYANNILH YIHNNRWNDY AYVGDDWQPT GNFNYSDDRE SQLSDVIVNK
IVETANLSKN KGISALNIAL PDDNKRQGVY LVAVNSEEEA YLGATKLVSI SDIGLIAKQG
KDELWIFANS IKTNEPIKDL ELTVVSSNNQ SVHTFKTDAD GIAHVDKLSE KAPGFKVAMI
TASTQDDFNF LLLEDSQVLT SRFDVEGLRD NASGYQVFIY GQRDIYRPGE TMHFNTVLRT
QDWKTAGKVP LKLRLLTPNG REFRTWRKTT NEQGAVESEI PLDAGVLTGT YVLEVYNANE
VLLGSQAVSV EEFMPDRIKV DLSRAAKDYM SGQKVSLTAT AINLFGPPAS NRNYQMDFQL
QRKGFTAKAF PEYSFNIPAQ TAFERDSRQG ITNEQGQASE QFALAAGLQD IGVLEGKIYV
TVFDENGRPV NRLQRFDVYT QPVFYGIRLP DSYVGTNAPV PVDIVGVGKS GALQNGATAS
IEVVRLEYQT VVEKKYERLQ YTSRKKEKLV YSNKLTLAGG KGTFRYVPTV SGEYEVRVKR
PGATHYTLAN FYAYGYGYTQ YSSFEVSNEG QVLMETDKDS YKMGESARVL FKTPFDGRLL
VTVERNNVLE QHILTTEKKA AELTFKIKEA HLPNVFVTAT LIRPLDASNM PLTVAHGFQP
IAVEDPDRRL PVSITAVEKS RSKMKQQIRI KTEPNAEVTL AIVDEGILQI KNSKTPDIHG
HFYQKRALEV TSYDLYAQLF PELSISGTSS SGGDGYDLER RINPLSNGRT ELVSFWSGQL
KANGSGDVTF DVNIPQFSGD LRIMAVAYKD NAFGSATKNM KVADPIVISA GLPRFLSPGD
ELVLPVNISN TEAKGTTATV SVQLAGPLAA GQAPVTQNIS IPAGKESRAV FSLKALTAIG
VGKVTVKVNA FKETFVNQTE ITVRPASPLL KTNVSGLIAA DKQGQIDLRS SFIPATASSQ
VVLSRSPLVQ GGGKALSTLL GYPYGCLEQT VSKAFPQIYF ADLTKAMATP VYTVKSGESD
FNPMTNVQQA IRKVESQQLF NGGVGMWPGA TREDWWATAY AVHFLEEARR AGFEVNAKTL
SRAVEYLTAQ SGTTANREVV VASTGNGLAY DAQPTGTQTR KTVARREAIY SLYVLALNGH
PNRASMNYYK QNPHLLTADS KYLLAGAFQL AGDARSFNAL LPRTYVAENA GRYTDDSYSS
PLRNMSLVLN TLIESDPSNA QIQVLGRQLS QAIQSASYLN TQEAAFAVLA LGKLARKTAN
STVTASVSAN GKPLGQFTGK ELKISKGIIN QKLQVKTQGK GDLYWFAQTA GMSATGNYVE
EDQGISIRRQ FLTRSGAPVQ SFRQNDLVVV KLTLASTNGL PVENIVVTDL LPSGFEIENP
RITEPRDMPW ITKASVPEYY DIRDDRIHFF TTADAQEKTF YYQVRVVSKG TFTVGPAAAD
AMYQGEYRSY SGGGKITVE