Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_3542 |
Symbol | |
ID | 8227127 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 4326115 |
End bp | 4331574 |
Gene Length | 5460 bp |
Protein Length | 1819 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644931377 |
Product | alpha-2-macroglobulin domain protein |
Protein accession | YP_003087915 |
Protein GI | 255037294 |
COG category | [R] General function prediction only |
COG ID | [COG2373] Large extracellular alpha-helical protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGA CTGCCATCCT GTGTTCTTTT TGCGTTCTCT TTTTGGTCTG GGTTTTCACT AGCTGCTCTT CTTTCAACGA AATCCGCGTG GCGGGCACCA ACTTCACCGA GGAAGTGGGG CAATCGCAAA ACCTCGTTTT TACATTTAAC AAAGACCTTG TTTCAACAGC CGAGCTGAAC AGTTGGGACT CGACGCAATT CGTGACTTTC GAGCCGGCGG TGCGGGGGAA ATTCAAATGG ACGGCACCCA ATGAGCTCGT TTTTTCGCCG GTGGCAGGCT TTGGAGCGGC CACTTCCTAC AAAGCGCAGC TCACAGATCT GATCACTGAA AAGTCATACA AGGACAAGAA GTACAAACTT TCCCAGGACC CGATCACATT CCACACACCA TATCTCCAAC TCGCCGAAAC GGAAAGCTGG TGGACATTGT CATCAGAAAC AGGCCGGCAG GAAGCGCGGA TAAGGCTGCA TTTCAACTAC CCGGTCAATG CACAGCATGT GGCCGAAAAA TTGAAGGTTT TGTCCGGAAA CCAGGCATTG GAATACCGCA TTCTGCCCTC TCAGGACGAA TCGGCGGTGA CGCTGGCATT TGCGAAAGTG GGTGCGGCCG ATAACAACGA AACGGCCGTC AATATCACCA TCGACAAGGG TGTGAAGGTG CAAAATACCT CTTACAGCAG TCAGGAAGCA CTTTCAAAAA CAGTGAGCAT ACCTTCGCCG CTTCATTTGG AAGTCGTGGA TATTAAAACC GGCTTTGAAA ACAATGCGGG CTACGCGAGG GTGATCACCA CGCAGGAGCT GGACAAGGAA AGTATAGCGG GCAGCGTTGC CGTAAATCCG GAAGCTGCGG TGGAAACGGA GCCTACCGAA AACGGTTTTA TCGTGCGCGG CGCATTCAAC GAAACCGAAA CATATGTGCT GCAACTGAAA CAATCGCTGA AAGGAGTTTT GGGACAAACT TTGGAGGAAG AAGCATCCCG TGACCTGTTT TTTGGGAAAA TGCCCGCGGC TATCTCCTTT GCAAACAAGA AGGGCCTGTA CTTATCGACC AAAAGCTCCC GCAATATCGG CGTCAACATC GTGAATGTGC CCAAAGTGCA GGTACGCATT TCGAAGCTGT ATGCGAATAA TATCCTGCAT TATATTCACA ACAACCGCTG GAACGACTAC GCTTATGTGG GCGACGACTG GCAGCCTACC GGCAATTTCA ATTACAGCGA CGACCGCGAA AGCCAGCTGA GCGATGTGAT CGTGAATAAG ATTGTAGAAA CAGCAAATTT GTCCAAAAAC AAAGGCATTT CCGCATTGAA TATCGCATTG CCCGACGATA ACAAACGGCA GGGCGTGTAC CTGGTAGCGG TGAATTCCGA GGAGGAAGCC TACCTCGGCG CCACGAAACT CGTCTCCATT TCCGATATCG GCCTCATTGC GAAGCAGGGC AAGGATGAAC TGTGGATTTT TGCCAATTCC ATCAAAACCA ACGAGCCGAT CAAAGACCTT GAACTGACGG TGGTGAGCTC CAACAATCAA TCGGTGCATA CGTTCAAAAC GGACGCCGAC GGCATTGCCC ACGTGGACAA GCTGAGCGAA AAAGCGCCGG GCTTCAAGGT CGCCATGATC ACGGCCAGTA CCCAGGACGA TTTTAATTTC CTCTTACTGG AAGACTCGCA GGTGCTCACC TCGCGCTTCG ATGTGGAGGG TTTGCGGGAC AATGCATCAG GCTATCAGGT GTTTATCTAC GGCCAGCGCG ATATTTACCG TCCGGGCGAA ACCATGCATT TCAACACCGT GCTGCGGACG CAGGATTGGA AAACAGCCGG GAAAGTACCT TTGAAACTGC GCTTGCTGAC CCCGAACGGC CGGGAATTCA GGACGTGGCG GAAAACAACT AACGAACAAG GTGCGGTAGA ATCCGAAATC CCGCTGGACG CAGGTGTGCT CACGGGCACG TATGTGCTCG AAGTATACAA TGCAAACGAG GTGCTGCTCG GTTCGCAGGC GGTAAGCGTC GAGGAATTTA TGCCGGATCG CATTAAGGTA GACCTCAGCA GGGCTGCGAA AGATTATATG TCGGGGCAAA AAGTGTCGCT CACGGCCACC GCAATTAACC TTTTTGGTCC GCCCGCGAGC AACCGCAACT ATCAGATGGA TTTCCAGTTG CAGCGTAAAG GGTTCACTGC CAAAGCATTT CCAGAATACA GTTTTAACAT ACCCGCGCAA ACCGCATTCG AGCGCGACAG CCGCCAGGGC ATTACCAACG AACAGGGCCA GGCCAGCGAG CAGTTTGCAT TGGCGGCCGG CTTGCAGGAT ATCGGCGTGC TGGAAGGCAA GATATACGTG ACGGTGTTCG ACGAAAATGG CCGGCCCGTA AACAGGTTAC AGCGTTTCGA CGTGTACACG CAGCCGGTGT TCTACGGCAT TCGCCTGCCC GACAGCTATG TAGGTACCAA TGCACCGGTG CCGGTTGACA TTGTGGGGGT AGGAAAGAGC GGCGCGTTGC AGAACGGCGC AACGGCCAGC ATCGAGGTGG TACGGCTTGA ATATCAGACG GTTGTTGAAA AGAAATATGA GCGCCTGCAA TACACATCAC GTAAAAAAGA GAAATTGGTT TATTCCAACA AACTTACCCT GGCAGGCGGA AAGGGCACTT TCCGCTATGT GCCCACGGTA TCGGGTGAGT ATGAAGTGCG CGTAAAACGC CCCGGCGCTA CGCATTACAC GCTGGCCAAT TTTTATGCTT ACGGTTATGG ATATACCCAG TATTCGTCGT TTGAGGTGAG CAATGAGGGC CAGGTACTGA TGGAAACCGA TAAGGACAGC TACAAAATGG GCGAATCGGC CAGGGTGCTG TTCAAAACGC CGTTTGATGG ACGACTGCTG GTAACCGTTG AGCGTAACAA TGTTTTGGAA CAGCATATCC TCACCACTGA AAAGAAAGCA GCGGAACTGA CATTTAAAAT CAAAGAAGCG CACCTGCCCA ATGTATTCGT AACGGCGACG CTCATCCGGC CGCTGGATGC GTCGAACATG CCGCTGACGG TCGCTCATGG CTTTCAGCCG ATTGCGGTGG AGGACCCGGA CCGCAGGTTG CCGGTCAGCA TCACGGCAGT TGAAAAGTCG AGATCGAAAA TGAAGCAGCA GATCAGGATC AAAACTGAAC CGAATGCGGA GGTGACGCTG GCTATTGTGG ATGAAGGCAT TCTTCAGATC AAAAACTCCA AAACGCCGGA TATTCACGGT CATTTCTACC AAAAACGGGC TTTGGAAGTG ACCAGCTACG ATTTGTACGC GCAGCTGTTC CCGGAACTGT CGATCTCCGG CACATCGAGC TCGGGCGGTG ATGGCTACGA TCTGGAAAGG AGGATTAACC CGCTAAGCAA TGGCCGGACG GAACTCGTGT CGTTTTGGAG CGGGCAGCTC AAAGCCAATG GCAGCGGTGA TGTAACTTTC GATGTGAACA TCCCGCAGTT CAGCGGCGAC TTGCGCATTA TGGCGGTCGC TTATAAAGAC AATGCATTTG GCTCCGCAAC CAAAAACATG AAGGTAGCCG ACCCGATCGT GATCAGCGCC GGATTGCCGC GTTTCCTGAG CCCTGGTGAT GAGCTTGTAC TGCCTGTGAA TATCAGCAAC ACGGAGGCGA AAGGAACTAC CGCCACGGTT TCCGTACAGC TTGCAGGGCC ATTGGCAGCG GGACAGGCGC CGGTTACGCA AAATATCAGC ATTCCGGCCG GGAAGGAAAG CAGGGCCGTT TTCTCCTTAA AAGCATTAAC GGCGATCGGC GTGGGCAAGG TAACGGTGAA AGTGAATGCA TTCAAAGAAA CTTTCGTGAA TCAGACCGAG ATTACCGTGC GGCCTGCGTC GCCCCTGCTG AAAACGAATG TGTCGGGACT TATTGCGGCC GATAAACAGG GGCAGATTGA CCTTCGTTCG TCATTCATTC CTGCCACGGC AAGCAGCCAG GTGGTTTTGA GCCGGTCGCC ATTGGTGCAG GGCGGAGGTA AGGCATTGTC AACATTGCTT GGCTATCCTT ACGGCTGCCT GGAACAAACC GTGTCGAAAG CATTCCCGCA GATCTACTTC GCCGACCTCA CCAAGGCCAT GGCAACGCCG GTTTATACGG TGAAAAGCGG TGAAAGTGAC TTTAATCCGA TGACCAACGT GCAGCAGGCG ATCCGGAAAG TGGAATCGCA GCAACTGTTC AACGGGGGAG TGGGCATGTG GCCGGGAGCT ACCCGGGAAG ACTGGTGGGC TACCGCTTAC GCCGTTCATT TCCTGGAAGA AGCACGCAGG GCTGGGTTTG AGGTCAATGC CAAAACACTC AGCCGGGCCG TCGAATACCT CACTGCCCAA AGCGGGACGA CGGCCAACAG GGAAGTGGTT GTTGCCAGCA CCGGCAATGG CCTGGCTTAT GACGCGCAGC CTACGGGCAC CCAAACGCGC AAAACAGTGG CACGCCGCGA GGCGATTTAC TCGCTTTATG TACTCGCCCT GAACGGCCAT CCGAACCGGG CTTCGATGAA TTATTACAAA CAAAATCCGC ATTTGCTCAC GGCCGATTCA AAATACCTGC TCGCAGGCGC ATTCCAGCTC GCGGGCGATG CGCGGAGCTT TAACGCGCTG CTGCCCAGGA CGTATGTTGC CGAAAATGCT GGACGCTACA CAGACGACAG CTATTCGTCA CCGCTTCGGA ATATGTCGTT GGTTTTGAAT ACATTAATCG AATCGGACCC GTCGAATGCG CAGATTCAGG TGCTCGGGCG CCAGCTTTCA CAGGCCATCC AGTCGGCTTC GTATCTGAAC ACCCAGGAAG CGGCATTTGC CGTACTGGCA TTGGGTAAGC TGGCCAGGAA AACGGCCAAT TCTACCGTCA CGGCTTCGGT TTCTGCCAAT GGCAAGCCGC TCGGGCAGTT TACTGGTAAG GAATTGAAAA TTTCGAAAGG CATTATAAAC CAGAAATTGC AGGTCAAAAC ACAGGGTAAG GGCGATTTGT ACTGGTTTGC ACAAACGGCG GGCATGTCTG CGACGGGAAA CTATGTGGAG GAAGACCAGG GAATCAGCAT TCGCCGCCAG TTCCTGACGC GCTCCGGTGC GCCTGTGCAA TCTTTCAGGC AAAACGACCT GGTAGTAGTA AAGCTGACCC TTGCGAGCAC AAACGGCCTG CCGGTGGAGA ACATTGTGGT AACAGACCTG CTGCCGTCCG GTTTTGAAAT AGAAAACCCC CGCATTACCG AGCCGCGGGA TATGCCGTGG ATTACCAAAG CATCCGTCCC CGAATATTAC GACATCCGCG ACGACCGCAT TCATTTCTTC ACCACGGCCG ACGCCCAGGA AAAGACCTTC TACTACCAGG TCAGGGTAGT TTCAAAAGGA ACATTCACGG TAGGCCCGGC CGCTGCGGAT GCAATGTACC AGGGAGAATA CCGCAGCTAT TCGGGTGGTG GGAAGATTAC GGTTGAATAA
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Protein sequence | MKKTAILCSF CVLFLVWVFT SCSSFNEIRV AGTNFTEEVG QSQNLVFTFN KDLVSTAELN SWDSTQFVTF EPAVRGKFKW TAPNELVFSP VAGFGAATSY KAQLTDLITE KSYKDKKYKL SQDPITFHTP YLQLAETESW WTLSSETGRQ EARIRLHFNY PVNAQHVAEK LKVLSGNQAL EYRILPSQDE SAVTLAFAKV GAADNNETAV NITIDKGVKV QNTSYSSQEA LSKTVSIPSP LHLEVVDIKT GFENNAGYAR VITTQELDKE SIAGSVAVNP EAAVETEPTE NGFIVRGAFN ETETYVLQLK QSLKGVLGQT LEEEASRDLF FGKMPAAISF ANKKGLYLST KSSRNIGVNI VNVPKVQVRI SKLYANNILH YIHNNRWNDY AYVGDDWQPT GNFNYSDDRE SQLSDVIVNK IVETANLSKN KGISALNIAL PDDNKRQGVY LVAVNSEEEA YLGATKLVSI SDIGLIAKQG KDELWIFANS IKTNEPIKDL ELTVVSSNNQ SVHTFKTDAD GIAHVDKLSE KAPGFKVAMI TASTQDDFNF LLLEDSQVLT SRFDVEGLRD NASGYQVFIY GQRDIYRPGE TMHFNTVLRT QDWKTAGKVP LKLRLLTPNG REFRTWRKTT NEQGAVESEI PLDAGVLTGT YVLEVYNANE VLLGSQAVSV EEFMPDRIKV DLSRAAKDYM SGQKVSLTAT AINLFGPPAS NRNYQMDFQL QRKGFTAKAF PEYSFNIPAQ TAFERDSRQG ITNEQGQASE QFALAAGLQD IGVLEGKIYV TVFDENGRPV NRLQRFDVYT QPVFYGIRLP DSYVGTNAPV PVDIVGVGKS GALQNGATAS IEVVRLEYQT VVEKKYERLQ YTSRKKEKLV YSNKLTLAGG KGTFRYVPTV SGEYEVRVKR PGATHYTLAN FYAYGYGYTQ YSSFEVSNEG QVLMETDKDS YKMGESARVL FKTPFDGRLL VTVERNNVLE QHILTTEKKA AELTFKIKEA HLPNVFVTAT LIRPLDASNM PLTVAHGFQP IAVEDPDRRL PVSITAVEKS RSKMKQQIRI KTEPNAEVTL AIVDEGILQI KNSKTPDIHG HFYQKRALEV TSYDLYAQLF PELSISGTSS SGGDGYDLER RINPLSNGRT ELVSFWSGQL KANGSGDVTF DVNIPQFSGD LRIMAVAYKD NAFGSATKNM KVADPIVISA GLPRFLSPGD ELVLPVNISN TEAKGTTATV SVQLAGPLAA GQAPVTQNIS IPAGKESRAV FSLKALTAIG VGKVTVKVNA FKETFVNQTE ITVRPASPLL KTNVSGLIAA DKQGQIDLRS SFIPATASSQ VVLSRSPLVQ GGGKALSTLL GYPYGCLEQT VSKAFPQIYF ADLTKAMATP VYTVKSGESD FNPMTNVQQA IRKVESQQLF NGGVGMWPGA TREDWWATAY AVHFLEEARR AGFEVNAKTL SRAVEYLTAQ SGTTANREVV VASTGNGLAY DAQPTGTQTR KTVARREAIY SLYVLALNGH PNRASMNYYK QNPHLLTADS KYLLAGAFQL AGDARSFNAL LPRTYVAENA GRYTDDSYSS PLRNMSLVLN TLIESDPSNA QIQVLGRQLS QAIQSASYLN TQEAAFAVLA LGKLARKTAN STVTASVSAN GKPLGQFTGK ELKISKGIIN QKLQVKTQGK GDLYWFAQTA GMSATGNYVE EDQGISIRRQ FLTRSGAPVQ SFRQNDLVVV KLTLASTNGL PVENIVVTDL LPSGFEIENP RITEPRDMPW ITKASVPEYY DIRDDRIHFF TTADAQEKTF YYQVRVVSKG TFTVGPAAAD AMYQGEYRSY SGGGKITVE
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