| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3480 |
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| Symbol | smpB |
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| ID | 8227065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 4260412 |
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| End bp | 4260870 |
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| Gene Length | 459 bp |
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| Protein Length | 152 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644931317 |
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| Product | SsrA-binding protein |
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| Protein accession | YP_003087855 |
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| Protein GI | 255037234 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0691] tmRNA-binding protein |
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| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.010322 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.585109 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGGAAA AAATAGTTAA AAAAGTAGAT ATAAAGAACA GACGGGCCTC ATTCGAATAC
TTCTTCCTGG AAGAGTTCAC GACCGGTATG GTGCTTACAG GCACTGAAAT CAAGTCGATC
CGGCAGGGTA AGGTCAATTT CCAGGATGCT TACTGCCTGT TTATGGATGG CGAGCTCTTC
ATCCGCAGCC TGCACATCTC GCCTTATACG GAAGGCACGC ATTACAACCA CGAGCCGATG
CGCGACCGCA AGTTGCTCAT TACCAAACGT GAACGTAAGA AACTGATCGA AGGTTTGAAG
GATGTAGGCC TTACGATTAT ACCTGTCCGG TTGTTTACCA GCGAGCGCGG CCTGGCCAAG
CTGCACATTG CATTGGCAAA AGGTAAAAAG CTTTACGACA AGCGCGACAG CATCAAGGAG
CGCGACGTGA AGCGCGAGAA CGATCGGGCA GGCTACTGA
|
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| Protein sequence | MSEKIVKKVD IKNRRASFEY FFLEEFTTGM VLTGTEIKSI RQGKVNFQDA YCLFMDGELF
IRSLHISPYT EGTHYNHEPM RDRKLLITKR ERKKLIEGLK DVGLTIIPVR LFTSERGLAK
LHIALAKGKK LYDKRDSIKE RDVKRENDRA GY
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