| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3479 |
|---|
| Symbol | |
|---|
| ID | 8227064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4259755 |
|---|
| End bp | 4260264 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644931316 |
|---|
| Product | HNH endonuclease |
|---|
| Protein accession | YP_003087854 |
|---|
| Protein GI | 255037233 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1403] Restriction endonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0281943 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.571859 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAAG TACTGGTTCT GAATCAAGAT TATAGCGCAC TAAGTGTTTG CACAGTTCCG
AAAGCGTTTC TGCTGGTTTA TATGAAAAAA GCGGAAATGC TCGCAGAGTC TCAGCAGGAG
CATCTCAGGA CTGTCAACGA CAGGTTTCCC ATGCCCGTCG TGATACGCCT GCATCGCTAC
ATACATATAC CATACAGGGG CGTAGTCATG ACCAGGCAAA ACCTCTTCAA GCGGGACGGC
AACAGGTGCC AGTACTGCGG AACCCACGAT AATCTGACGC TGGACCATGT GATGCCAAAA
AGTAGGGGAG GAAAGACCAC CTGGGACAAT TTGGCCACCG CCTGTAAAAG ATGCAACTCC
CGCAAAGGAG ACCATACGCC GGAAGAGGTT GACATGCCGT TAAAGCAGCG ACCGTTCCGG
CCTTCTTTTT TAATGTTCAT CCGGGATTTT TCGGGCATGG CCGACGATGA GTGGCTGCCG
TATCTTGGGT CGAAGGAACG GCACTGTTAA
|
|---|
| Protein sequence | MGKVLVLNQD YSALSVCTVP KAFLLVYMKK AEMLAESQQE HLRTVNDRFP MPVVIRLHRY
IHIPYRGVVM TRQNLFKRDG NRCQYCGTHD NLTLDHVMPK SRGGKTTWDN LATACKRCNS
RKGDHTPEEV DMPLKQRPFR PSFLMFIRDF SGMADDEWLP YLGSKERHC
|
|---|
| |