Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_3449 |
Symbol | rpoB |
ID | 8227029 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 4224964 |
End bp | 4228830 |
Gene Length | 3867 bp |
Protein Length | 1288 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644931281 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_003087824 |
Protein GI | 255037203 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.806557 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0329985 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCTACTA TTAATCCAAA AACACCAAGA AAGAACTTCT CAAGGATCAA TCAGATTATC GATTATCCGG ATCTTTTGGG AATCCAGGTA CAATCATTCC GGGATTTCTT CAGTCTGGAT ACGTCGGTTG AAGACCGTTC CGGAGAAGGA CTTTACAAAG TTTTCGCTGA AAACTTCCCC ATCGCCGACT CACGCGAAAA CTTCGTTCTC GAGTTCATCG ATTACCTCCT TGAACCACCG AAGTATTCTG TCGACGAATC CATCGATCGC GGTCTGACTT ACGCAGTGCC TTTGAAGGCG AAACTGCGTT TGATCTGTAA TGACGCCGAT CATGAAGAAT TTGAAACCAT TGAGCAGGAA GTATTCCTCG GAAACATTCC TTACATGACC GAACGCGGTT CGTTCGTGAT CAATGGTGCT GAGCGTGTAA TCGTATCTCA GCTTCACCGT TCACCAGGCG TGTTCTTCTC GATGAGCAAG CACACCAACG GTTCCAAACT ATATTCTGCG CGGATTATTC CATTCAAAGG TTCCTGGATC GAATTCTCTA CGGACGTGAA CAACGTGATG TACGCGTACA TCGACCGTAA GAAGAAGTTC CCGGTAACTA CACTTTTGAG AGCGATCGGT TTCGGATCTG ATAAAGACAT CCTCGACCTC TTCGGCCTTT CGGAAGAAAT CAGCGCAACA CCTGCTAACC TGAAAAAGGC AGTAGGACGC CGGTTGGCGG CAAGGGTTCT CCGTACTTGG ACTGAGGACT TCGTGGATGA GGATACCGGC GAGGTAGTGT CAATCCAGCG TAACGAAGTG TTGCTGGAAC GTGACTCTAC TATTTCTGCG GATGATATCG ATGTGATCCT GGAATCAGGT CAGAAATCGA TCATCATGCA CAAAGAGGAC ATGAACGTAG CGGATTATAA CATCATTTAT AATACGCTTC AAAAAGATAG CTCAAACTCC GACAAGGAAG CTGTTGAGCA AATTTACCGT CAGCTGCGTA ATGCGGAAGC TCCGGACGAG CAAACTGCAC GTGACGTGAT CCAGAGCTTG TTCTTCTCGG ATAAGCGTTA CGACCTGGGC GATGTAGGCC GTTACCGTAT CAACAAGAAA TTGGGATCGG ATACCAGCCT CGACGTGCGC GTTCTGACAA CCGGTGATAT CGTTTCCATC GTGAAATACC TGATCGGTTT GATCAATGCG AAAGCGGTAG TCGATGATAT CGATCACTTG TCAAACCGTC GTGTACGTAC GGTTGGCGAG CAGTTGTATG CACAGTTTGG TGTAGGTTTG GCACGTATGG CGCGTACCAT CAAGGAGCGT ATGAACGTGC GTGATAACGA AGATTTCAAA CCTGTTGATC TGATCAATGC AAGAACATTG TCATCAGTAA TCAACTCGTT CTTCGGTACC AACCAGCTTT CTCAGTTCAT GGACCAAACC AACCCATTGG CTGAGATTAC GCACAAACGT CGTATGTCGG CACTCGGGCC AGGTGGTCTT TCCCGTGAAA GAGCAGGTTT CGAGGTTCGT GACGTTCACT ACACCCACTA CGGGCGTCTG TGTACGATCG AAACACCCGA AGGTCCGAAC ATCGGTCTGA TCTCGTCACT TTGCGTATTT GCGAAAGTGA ATGGAATGGG CTTCATCGAA ACGCCTTACC GCGTGATCGA CGGCTCAGGA AAGCTGACCG ACGAGCTGAT TTACATGACG GCGGAAGAAG AAGATTCCAA GTACATCGCA CAAGCGAATG CTTCTGTGGA TAAAGAAGGA AACTTCACCG TTGAGAAAAT TAAAACACGT TTCGAAGGTG ACTTCCCGAT GGTAGATCCT TCGCAAGCGT CTTATATGGA CGTTGCTGCC AACCAGATCG TATCGGTAGC GGCTTCGCTG ATCCCGTTCC TCGAACACGA TGATGCGAAC CGTGCATTGA TGGGATCGAA CATGCAGCGC CAGGGTGTGC CTTTGTTGCG CCCTCAGGCT CCAATCGTAG GAACTGGTCT GGAACGCCGT GTTGCCATGG ACTCACGTGC ATTGGTAGTA GCGGAAGGCG ACGGTGAAAT CGAATTCGTG GATTCGAAGA AAATCGTTGT GAAATACGAC AGAACGGATG AGGACCGTCT GGTAAGCTTC ATTGACGACA GTGTTACTTA CAACCTCGTG AAATTCCGTC GTACCAACCA GGACACTTGC TTGAACCTTC AACCAATGGT GTTGAAAGGC CAGAAAGTGA AGAAAGGCGA GCCGCTTTGC CAGGGATATG GTACCGAAGG TGGCGAGTTG GCATTGGGCC GTAACTTGTT GGTTGCATTC ATGCCTTGGC AGGGATACAA CTTCGAGGAT GCGATCGTAA TCTCCGAAAA AGTAGTACGC GACGATATCT TTACTTCGAT CCACATCGAA GAATTCGAAC TGGAAGTGCG TGATACCAAA CGCGGAGAAG AAGAGCTGAC CGCTGAGATC CCGAACGTAA GTGAGGAAAC TGTGAAGAAC CTCGACGAAA ATGGTATCGT ACAAGTAGGT ACTGAGGTTA AAGAAGGTGA TATCCTGATC GGTAAGATTA CTCCAAAAGG AGAATCTGAT CCTACCCCGG AAGAAAAACT CCTTCGTGCG ATCTTCGGCG ATAAGGCTGG TGATGTGAAG GATGCTTCCA AAAAAGCACC GCCATCGATG AAAGGTGTGG TAATCGATAC CAAACTGTTC TCCCGCCCGA CCAAAGAAGA GCGTGCAAAA CATAAAGACG AGCTGCGTCT GTTGATGAAG AAATACAGCC GTGACCTGAC GGCATTGCGC GGTCGTGTGA TCGACAAGCT GGTTCAGCTG ACTGACGGCA AAACGAGCTC AGGCGTGAAG CACAAATTCG GTGACGAGCT GATCAGCAAA GGAATGAAGT TCAATGTGAG AAATATCTCC GAGAACTTGT TCCCTGCGAA CAACCCGTAC CGCGACGAAA GCCAGTACGC TGTTCCCGAA GAGGTAAACC TCATCGGAGA CGTATTGACC GACTCTTGGA GCGACGACGC TGACACCAAC CGTCAGATCT CGCTGGTGTT GAAAAACTAC CTGAATGCCC GCAGCGAAGT AATGGGCCGC TTCAAACGCG ATCGTTTCGC ATTGGAAGTA GGTGATGAAT TGCCAGCAGG TATCGTGAAA CTCGCGAAAG TATACATCGC TAAGAAGCGC AAGCTGAAAG TGGGTGATAA AATGGCGGGT CGCCACGGTA ACAAAGGGGT TGTTGCCCGT ATCGTTCGTG ACGAGGATAT GCCATTCCTG GAAGACGGAA CGCCGGTAAA CATCGTGTTG AACCCACTCG GGGTACCTTC ACGTATGAAC ATCGGTCAGA TTTACGAAAC CATCCTCGCA TGGGCTGGTC TGAAACTTGG CCGACGCTAC GCAACACCGA TCTTTGACGG TGCTACCGAA GCGGAAGTTG CTGCCGAGTT GAAAGAAGCA GGTCTGCCGG ATTGGGGACG TACTTATCTG TACAATGGTC TCACTGGTGA GCAGTTCGAC CAGCCGGTTA CAGTCGGTCT GATGTACATG ATGAAACTGG GCCACTTGGT TGACGATAAA ATGCACGCGC GTTCTATCGG GCCATACTCG CTCATTACTC AACAACCATT GGGTGGTAAA GCGCAGTTCG GTGGACAGCG TTTCGGTGAA ATGGAAGTGT GGGCGCTTGA AGCGTTCGGT GCTTCCCACA TTCTGCAAGA GATCCTCACT GTGAAATCCG ATGATGTGGT AGGCCGTGCC AAAGCGTACG AAGCGATCGT GAAAGGTGAA AACCTTCCGA AACCAAATAT CCCAGAGTCA TTCAACGTAC TTGTTCACGA GCTTCGCGGA CTAGCATTGG AGATTACACT GGACTAA
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Protein sequence | MATINPKTPR KNFSRINQII DYPDLLGIQV QSFRDFFSLD TSVEDRSGEG LYKVFAENFP IADSRENFVL EFIDYLLEPP KYSVDESIDR GLTYAVPLKA KLRLICNDAD HEEFETIEQE VFLGNIPYMT ERGSFVINGA ERVIVSQLHR SPGVFFSMSK HTNGSKLYSA RIIPFKGSWI EFSTDVNNVM YAYIDRKKKF PVTTLLRAIG FGSDKDILDL FGLSEEISAT PANLKKAVGR RLAARVLRTW TEDFVDEDTG EVVSIQRNEV LLERDSTISA DDIDVILESG QKSIIMHKED MNVADYNIIY NTLQKDSSNS DKEAVEQIYR QLRNAEAPDE QTARDVIQSL FFSDKRYDLG DVGRYRINKK LGSDTSLDVR VLTTGDIVSI VKYLIGLINA KAVVDDIDHL SNRRVRTVGE QLYAQFGVGL ARMARTIKER MNVRDNEDFK PVDLINARTL SSVINSFFGT NQLSQFMDQT NPLAEITHKR RMSALGPGGL SRERAGFEVR DVHYTHYGRL CTIETPEGPN IGLISSLCVF AKVNGMGFIE TPYRVIDGSG KLTDELIYMT AEEEDSKYIA QANASVDKEG NFTVEKIKTR FEGDFPMVDP SQASYMDVAA NQIVSVAASL IPFLEHDDAN RALMGSNMQR QGVPLLRPQA PIVGTGLERR VAMDSRALVV AEGDGEIEFV DSKKIVVKYD RTDEDRLVSF IDDSVTYNLV KFRRTNQDTC LNLQPMVLKG QKVKKGEPLC QGYGTEGGEL ALGRNLLVAF MPWQGYNFED AIVISEKVVR DDIFTSIHIE EFELEVRDTK RGEEELTAEI PNVSEETVKN LDENGIVQVG TEVKEGDILI GKITPKGESD PTPEEKLLRA IFGDKAGDVK DASKKAPPSM KGVVIDTKLF SRPTKEERAK HKDELRLLMK KYSRDLTALR GRVIDKLVQL TDGKTSSGVK HKFGDELISK GMKFNVRNIS ENLFPANNPY RDESQYAVPE EVNLIGDVLT DSWSDDADTN RQISLVLKNY LNARSEVMGR FKRDRFALEV GDELPAGIVK LAKVYIAKKR KLKVGDKMAG RHGNKGVVAR IVRDEDMPFL EDGTPVNIVL NPLGVPSRMN IGQIYETILA WAGLKLGRRY ATPIFDGATE AEVAAELKEA GLPDWGRTYL YNGLTGEQFD QPVTVGLMYM MKLGHLVDDK MHARSIGPYS LITQQPLGGK AQFGGQRFGE MEVWALEAFG ASHILQEILT VKSDDVVGRA KAYEAIVKGE NLPKPNIPES FNVLVHELRG LALEITLD
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