Gene Dfer_3449 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3449 
SymbolrpoB 
ID8227029 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4224964 
End bp4228830 
Gene Length3867 bp 
Protein Length1288 aa 
Translation table11 
GC content49% 
IMG OID644931281 
ProductDNA-directed RNA polymerase subunit beta 
Protein accessionYP_003087824 
Protein GI255037203 
COG category[K] Transcription 
COG ID[COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit 
TIGRFAM ID[TIGR02013] DNA-directed RNA polymerase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.806557 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0329985 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCTACTA TTAATCCAAA AACACCAAGA AAGAACTTCT CAAGGATCAA TCAGATTATC 
GATTATCCGG ATCTTTTGGG AATCCAGGTA CAATCATTCC GGGATTTCTT CAGTCTGGAT
ACGTCGGTTG AAGACCGTTC CGGAGAAGGA CTTTACAAAG TTTTCGCTGA AAACTTCCCC
ATCGCCGACT CACGCGAAAA CTTCGTTCTC GAGTTCATCG ATTACCTCCT TGAACCACCG
AAGTATTCTG TCGACGAATC CATCGATCGC GGTCTGACTT ACGCAGTGCC TTTGAAGGCG
AAACTGCGTT TGATCTGTAA TGACGCCGAT CATGAAGAAT TTGAAACCAT TGAGCAGGAA
GTATTCCTCG GAAACATTCC TTACATGACC GAACGCGGTT CGTTCGTGAT CAATGGTGCT
GAGCGTGTAA TCGTATCTCA GCTTCACCGT TCACCAGGCG TGTTCTTCTC GATGAGCAAG
CACACCAACG GTTCCAAACT ATATTCTGCG CGGATTATTC CATTCAAAGG TTCCTGGATC
GAATTCTCTA CGGACGTGAA CAACGTGATG TACGCGTACA TCGACCGTAA GAAGAAGTTC
CCGGTAACTA CACTTTTGAG AGCGATCGGT TTCGGATCTG ATAAAGACAT CCTCGACCTC
TTCGGCCTTT CGGAAGAAAT CAGCGCAACA CCTGCTAACC TGAAAAAGGC AGTAGGACGC
CGGTTGGCGG CAAGGGTTCT CCGTACTTGG ACTGAGGACT TCGTGGATGA GGATACCGGC
GAGGTAGTGT CAATCCAGCG TAACGAAGTG TTGCTGGAAC GTGACTCTAC TATTTCTGCG
GATGATATCG ATGTGATCCT GGAATCAGGT CAGAAATCGA TCATCATGCA CAAAGAGGAC
ATGAACGTAG CGGATTATAA CATCATTTAT AATACGCTTC AAAAAGATAG CTCAAACTCC
GACAAGGAAG CTGTTGAGCA AATTTACCGT CAGCTGCGTA ATGCGGAAGC TCCGGACGAG
CAAACTGCAC GTGACGTGAT CCAGAGCTTG TTCTTCTCGG ATAAGCGTTA CGACCTGGGC
GATGTAGGCC GTTACCGTAT CAACAAGAAA TTGGGATCGG ATACCAGCCT CGACGTGCGC
GTTCTGACAA CCGGTGATAT CGTTTCCATC GTGAAATACC TGATCGGTTT GATCAATGCG
AAAGCGGTAG TCGATGATAT CGATCACTTG TCAAACCGTC GTGTACGTAC GGTTGGCGAG
CAGTTGTATG CACAGTTTGG TGTAGGTTTG GCACGTATGG CGCGTACCAT CAAGGAGCGT
ATGAACGTGC GTGATAACGA AGATTTCAAA CCTGTTGATC TGATCAATGC AAGAACATTG
TCATCAGTAA TCAACTCGTT CTTCGGTACC AACCAGCTTT CTCAGTTCAT GGACCAAACC
AACCCATTGG CTGAGATTAC GCACAAACGT CGTATGTCGG CACTCGGGCC AGGTGGTCTT
TCCCGTGAAA GAGCAGGTTT CGAGGTTCGT GACGTTCACT ACACCCACTA CGGGCGTCTG
TGTACGATCG AAACACCCGA AGGTCCGAAC ATCGGTCTGA TCTCGTCACT TTGCGTATTT
GCGAAAGTGA ATGGAATGGG CTTCATCGAA ACGCCTTACC GCGTGATCGA CGGCTCAGGA
AAGCTGACCG ACGAGCTGAT TTACATGACG GCGGAAGAAG AAGATTCCAA GTACATCGCA
CAAGCGAATG CTTCTGTGGA TAAAGAAGGA AACTTCACCG TTGAGAAAAT TAAAACACGT
TTCGAAGGTG ACTTCCCGAT GGTAGATCCT TCGCAAGCGT CTTATATGGA CGTTGCTGCC
AACCAGATCG TATCGGTAGC GGCTTCGCTG ATCCCGTTCC TCGAACACGA TGATGCGAAC
CGTGCATTGA TGGGATCGAA CATGCAGCGC CAGGGTGTGC CTTTGTTGCG CCCTCAGGCT
CCAATCGTAG GAACTGGTCT GGAACGCCGT GTTGCCATGG ACTCACGTGC ATTGGTAGTA
GCGGAAGGCG ACGGTGAAAT CGAATTCGTG GATTCGAAGA AAATCGTTGT GAAATACGAC
AGAACGGATG AGGACCGTCT GGTAAGCTTC ATTGACGACA GTGTTACTTA CAACCTCGTG
AAATTCCGTC GTACCAACCA GGACACTTGC TTGAACCTTC AACCAATGGT GTTGAAAGGC
CAGAAAGTGA AGAAAGGCGA GCCGCTTTGC CAGGGATATG GTACCGAAGG TGGCGAGTTG
GCATTGGGCC GTAACTTGTT GGTTGCATTC ATGCCTTGGC AGGGATACAA CTTCGAGGAT
GCGATCGTAA TCTCCGAAAA AGTAGTACGC GACGATATCT TTACTTCGAT CCACATCGAA
GAATTCGAAC TGGAAGTGCG TGATACCAAA CGCGGAGAAG AAGAGCTGAC CGCTGAGATC
CCGAACGTAA GTGAGGAAAC TGTGAAGAAC CTCGACGAAA ATGGTATCGT ACAAGTAGGT
ACTGAGGTTA AAGAAGGTGA TATCCTGATC GGTAAGATTA CTCCAAAAGG AGAATCTGAT
CCTACCCCGG AAGAAAAACT CCTTCGTGCG ATCTTCGGCG ATAAGGCTGG TGATGTGAAG
GATGCTTCCA AAAAAGCACC GCCATCGATG AAAGGTGTGG TAATCGATAC CAAACTGTTC
TCCCGCCCGA CCAAAGAAGA GCGTGCAAAA CATAAAGACG AGCTGCGTCT GTTGATGAAG
AAATACAGCC GTGACCTGAC GGCATTGCGC GGTCGTGTGA TCGACAAGCT GGTTCAGCTG
ACTGACGGCA AAACGAGCTC AGGCGTGAAG CACAAATTCG GTGACGAGCT GATCAGCAAA
GGAATGAAGT TCAATGTGAG AAATATCTCC GAGAACTTGT TCCCTGCGAA CAACCCGTAC
CGCGACGAAA GCCAGTACGC TGTTCCCGAA GAGGTAAACC TCATCGGAGA CGTATTGACC
GACTCTTGGA GCGACGACGC TGACACCAAC CGTCAGATCT CGCTGGTGTT GAAAAACTAC
CTGAATGCCC GCAGCGAAGT AATGGGCCGC TTCAAACGCG ATCGTTTCGC ATTGGAAGTA
GGTGATGAAT TGCCAGCAGG TATCGTGAAA CTCGCGAAAG TATACATCGC TAAGAAGCGC
AAGCTGAAAG TGGGTGATAA AATGGCGGGT CGCCACGGTA ACAAAGGGGT TGTTGCCCGT
ATCGTTCGTG ACGAGGATAT GCCATTCCTG GAAGACGGAA CGCCGGTAAA CATCGTGTTG
AACCCACTCG GGGTACCTTC ACGTATGAAC ATCGGTCAGA TTTACGAAAC CATCCTCGCA
TGGGCTGGTC TGAAACTTGG CCGACGCTAC GCAACACCGA TCTTTGACGG TGCTACCGAA
GCGGAAGTTG CTGCCGAGTT GAAAGAAGCA GGTCTGCCGG ATTGGGGACG TACTTATCTG
TACAATGGTC TCACTGGTGA GCAGTTCGAC CAGCCGGTTA CAGTCGGTCT GATGTACATG
ATGAAACTGG GCCACTTGGT TGACGATAAA ATGCACGCGC GTTCTATCGG GCCATACTCG
CTCATTACTC AACAACCATT GGGTGGTAAA GCGCAGTTCG GTGGACAGCG TTTCGGTGAA
ATGGAAGTGT GGGCGCTTGA AGCGTTCGGT GCTTCCCACA TTCTGCAAGA GATCCTCACT
GTGAAATCCG ATGATGTGGT AGGCCGTGCC AAAGCGTACG AAGCGATCGT GAAAGGTGAA
AACCTTCCGA AACCAAATAT CCCAGAGTCA TTCAACGTAC TTGTTCACGA GCTTCGCGGA
CTAGCATTGG AGATTACACT GGACTAA
 
Protein sequence
MATINPKTPR KNFSRINQII DYPDLLGIQV QSFRDFFSLD TSVEDRSGEG LYKVFAENFP 
IADSRENFVL EFIDYLLEPP KYSVDESIDR GLTYAVPLKA KLRLICNDAD HEEFETIEQE
VFLGNIPYMT ERGSFVINGA ERVIVSQLHR SPGVFFSMSK HTNGSKLYSA RIIPFKGSWI
EFSTDVNNVM YAYIDRKKKF PVTTLLRAIG FGSDKDILDL FGLSEEISAT PANLKKAVGR
RLAARVLRTW TEDFVDEDTG EVVSIQRNEV LLERDSTISA DDIDVILESG QKSIIMHKED
MNVADYNIIY NTLQKDSSNS DKEAVEQIYR QLRNAEAPDE QTARDVIQSL FFSDKRYDLG
DVGRYRINKK LGSDTSLDVR VLTTGDIVSI VKYLIGLINA KAVVDDIDHL SNRRVRTVGE
QLYAQFGVGL ARMARTIKER MNVRDNEDFK PVDLINARTL SSVINSFFGT NQLSQFMDQT
NPLAEITHKR RMSALGPGGL SRERAGFEVR DVHYTHYGRL CTIETPEGPN IGLISSLCVF
AKVNGMGFIE TPYRVIDGSG KLTDELIYMT AEEEDSKYIA QANASVDKEG NFTVEKIKTR
FEGDFPMVDP SQASYMDVAA NQIVSVAASL IPFLEHDDAN RALMGSNMQR QGVPLLRPQA
PIVGTGLERR VAMDSRALVV AEGDGEIEFV DSKKIVVKYD RTDEDRLVSF IDDSVTYNLV
KFRRTNQDTC LNLQPMVLKG QKVKKGEPLC QGYGTEGGEL ALGRNLLVAF MPWQGYNFED
AIVISEKVVR DDIFTSIHIE EFELEVRDTK RGEEELTAEI PNVSEETVKN LDENGIVQVG
TEVKEGDILI GKITPKGESD PTPEEKLLRA IFGDKAGDVK DASKKAPPSM KGVVIDTKLF
SRPTKEERAK HKDELRLLMK KYSRDLTALR GRVIDKLVQL TDGKTSSGVK HKFGDELISK
GMKFNVRNIS ENLFPANNPY RDESQYAVPE EVNLIGDVLT DSWSDDADTN RQISLVLKNY
LNARSEVMGR FKRDRFALEV GDELPAGIVK LAKVYIAKKR KLKVGDKMAG RHGNKGVVAR
IVRDEDMPFL EDGTPVNIVL NPLGVPSRMN IGQIYETILA WAGLKLGRRY ATPIFDGATE
AEVAAELKEA GLPDWGRTYL YNGLTGEQFD QPVTVGLMYM MKLGHLVDDK MHARSIGPYS
LITQQPLGGK AQFGGQRFGE MEVWALEAFG ASHILQEILT VKSDDVVGRA KAYEAIVKGE
NLPKPNIPES FNVLVHELRG LALEITLD