| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3334 |
|---|
| Symbol | |
|---|
| ID | 8226912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4080809 |
|---|
| End bp | 4082407 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644931165 |
|---|
| Product | ATP dependent DNA ligase |
|---|
| Protein accession | YP_003087710 |
|---|
| Protein GI | 255037089 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGT TTGCCGAACT CTTCATGAAC CTCGACCGCA CGAATAAAAC CAATGCGAAG
GTCGAACTGC TGAAAAACTA CTTCCTGACG GCGTCGGACG AGGATAAGCT GTGGGCGCTC
ACATTGTTTA CCGGCCGCAG GCCGTCGTTC AAGGTCAATC GTACGCAGGT GAAGGGATGG
GCGGCAGCGG AAGCCGGCGT GCCGATGTGG CTTTTTCAGG AAAGCTACCA GAGTGTGGGG
GATTTGGGCG AGACCATTTC GCTCCTTTTG CCGCGGACCA GCCTGGGAGG TTCGGACAAA
TCGCTCTCGG AATGGTTCCG ATATCTCGGT ATGCTGCCCG GCATGAGCGA CGAAGAGAAG
CGCGACCACA TTATGCAGGC CTGGATGCAG CTTTCGCAGC ACGAGACATT TGTTTTCAAC
AAGCTGCTCA TGGGCAGTTT CCGCATTGGC GTATCGCAGA CGCTCGTCGT GCGTGCGCTC
GCGGAAGCGA CTGAAACGGA TTCCAACGTG ATTGCGCACC GCGTAATGGG CCAATGGGAC
CCGCTGGAAA CCACTTTCGA GCAGCTCATT CTCGACAAAG GCGAAAACGA CAATGCATCG
CGGCCCTACC CGTTTTTTCT CGCCTATCCG ATCGAAGGCG ACGTGGCGGA CCTCGGCGAG
GCAATCGATT GGTTTGCCGA ATGGAAATGG GACGGAATCC GGTCGCAGGT GATCTACCGG
AATCAGGAGC TGTTCATCTG GACGAGGGGC GAAGAGCTAT CCACTGAGAA ATTCCCCGAA
CTGCATTTTC TCAGCGACGT TCTGCCCGAA GGCACTGTGC TCGACGGCGA GATCGTGACT
TACATGAATG GCCGGCCGAT GCCTTTCAAT GTGCTGCAAA CGCGCATTGG AAGGAAAAAT
CTCTCTAAAA AAGTGCTTGA AGAAGCGCCG GTGGCGTTTT TGGCCTATGA TATTCTTGAA
GCAAACGGCG TGGACATTCG TGGCCTCACA CAGGAGCAGC GCCGCGCGCA GCTGGAAGCG
ATCCACGCCA ATGTGCCGCC GCAAAACCAT TTCAACCTGT CGCCGCTGAT CGATTTCACG
GACTGGCAGC AGCTGCGGGA GCTGCATCCG CAATCGCGCG AGAATATCGC GGAAGGATTT
ATGATCAAGC GAAAAGCGGG CATTTACCAG GTTGGCAGGA AAAAAGGCGA CTGGTGGAAG
TGGAAAATCG ATCCGCTGAG CGTGGACGCC GTGCTCATTT ACGCCCAAAA AGGCTCCGGT
CGCCGTGCCG AGCTCTTCAC GGATTACACC TTCGCGGTCT GGGGCGACGA CGGCAAGCTG
GTTCCATTCG CGAAAGCCTA CTCCGGCCTC ACCGACGCCG AAATCGGTCA GGTGGATTAC
TTCATCAAGC GCAACGTCCT CGAAAAATTC GGCCCTGTCC GGACGGTAAA GCCGGAACTG
GTTTTTGAAA TTGGCTTTGA AGGCATCAAC GAATCCTCCC GCCACAAATC GGGAATAGCC
GTACGCTTTC CGCGGATTTT GAGATGGAGG AAGGATAAGA AGGCGGCGGA GGCGGATAGC
CTTCAATCAC TCAGGGCGAT TCTGGAAGGG TTCAAATGA
|
|---|
| Protein sequence | MKQFAELFMN LDRTNKTNAK VELLKNYFLT ASDEDKLWAL TLFTGRRPSF KVNRTQVKGW
AAAEAGVPMW LFQESYQSVG DLGETISLLL PRTSLGGSDK SLSEWFRYLG MLPGMSDEEK
RDHIMQAWMQ LSQHETFVFN KLLMGSFRIG VSQTLVVRAL AEATETDSNV IAHRVMGQWD
PLETTFEQLI LDKGENDNAS RPYPFFLAYP IEGDVADLGE AIDWFAEWKW DGIRSQVIYR
NQELFIWTRG EELSTEKFPE LHFLSDVLPE GTVLDGEIVT YMNGRPMPFN VLQTRIGRKN
LSKKVLEEAP VAFLAYDILE ANGVDIRGLT QEQRRAQLEA IHANVPPQNH FNLSPLIDFT
DWQQLRELHP QSRENIAEGF MIKRKAGIYQ VGRKKGDWWK WKIDPLSVDA VLIYAQKGSG
RRAELFTDYT FAVWGDDGKL VPFAKAYSGL TDAEIGQVDY FIKRNVLEKF GPVRTVKPEL
VFEIGFEGIN ESSRHKSGIA VRFPRILRWR KDKKAAEADS LQSLRAILEG FK
|
|---|
| |