| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3249 |
|---|
| Symbol | |
|---|
| ID | 8226824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 3982210 |
|---|
| End bp | 3983928 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644931078 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_003087626 |
|---|
| Protein GI | 255037005 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0843615 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCCC TATCAAAGGA TACCTATCCA TGGCTTGAAA ACTATCCGGA AGGCATTCCC
TATGAAATCA ATCCGGATGC CTACTCGTCG CTGCTGGAAA TGATGGAGGT GAGCTTCCGC
GAAAATGCCG CCAAAACTGC CTATGCGAAT ATGGATAAGC AACTGACTTT CGGTCAGTTG
GACGAACTTT CGCAGAACTT CGCGGCTTAC CTGCAAAGCA TCGGCATGAA ACAGGGAGAC
CGCATTGCCC TGCAAATGCC CAACCTGCTG CAATATCCGG TGGTGATGAT GGGCTCGCTT
CGTGCCGGGC TTACGATTGT AAATACGAAC CCGCTTTACA CGCCACGCGA AATGCAGCAC
CAGTTCAAGG ATTCAGGCGC GAAAGCGATC GTGATCCTCG CCAATTTTGC TGCAAACCTT
GAAAAGGTCA TTGCCAACAC CAATATCGAA CACGTGATCA TCACCGAAAT CGGCGATATG
CTCGGCTTCC CTAAAAAGCT GATCGTAAAT GCCGTGGTGA AGTATATCAA GAAAATGGTC
CCGGCCTACC ACCTGAAAAA CACGGTGACG CTGGCGAATG CGCTATCGAT CGGTTCGGGG
GTTACCTATG AAAAACCCAA CGTATCCGGC CTCGACCTCG CATTTATCCA ATATACCGGC
GGCACCACGG GCGTATCCAA GGGCGCTATG CTCACGCACC GGAACCTGAT CGCCAACGTG
GAGGGCATTA ACGAATGGCT GATGTCCAAA ATGCGGACAT CGGAAACCAC CGGCCAGCTC
ACGCTCATCG GGGCGCTGCC GCTTTACCAC GTATTCGCGA TGACAATCAA CGGCTTATGC
GGCATTAAAT GGGGCGCATT GAATGTCCTG ATCACCAATC CGAAGGATAT TCCCGCATTT
GTAAAAGAAC TGAAAAAATA CACTTTCCAT ATTTTCCCGG GACTGAACAC GCTTTTCAAC
GGCCTGCTCA ACAATCCGGA GTTTGCTTCC GTCGATTTCT CGAACCTCAG AATTACGATC
GCGGGCGGAA TGGCTTTGCA GAAAATCGTG GCTGAGCGCT GGGAGAAAGC CACGGGCTGC
CCGTTGGTGG AAGGTTACGG CCTTTCCGAA ACTTCCCCGG TACTCTCGGT GAATCCGCTG
AATGGCAAAC ACAAGCAGGG TACCATCGGC TTGCCGTTCC CGAGCACTGA AATGCGCATC
CTGAGCGAGG ATAACAAATG GCTGCCGATC GGCGAACGCG GGGAGATCTG CGCGAAAGGC
CCGCAGATTA TGCTCGGCTA CTACAACCGC CCCGACGAAA CCGCCAAAGT GATCCTGGAA
GACGAAAGCG GCCGCTGGTT CAAGACGGGC GACATCGGGA TCGAAGACGC CGATGGATTT
TTCAAGATTG TGGACCGGAA AAAGGATATG ATCCTCGTTT CGGGTTTCAA TGTTTATCCC
AATGAAATCG AAGACGTGGT AGCGCAATGC CCCGGCGTGG CAGAAGTGGC TTGCGTGGGT
ATTCCCGACG AGAAATCGGG CGAGATGGTG AAAATTTTTG TGGTCAAAAA AGACCCGGAA
CTGACTGAGG AAAAGCTCAA AACCTACTGC AAGGAAAACC TGACGGGCTA CAAATGTCCG
CGCCGGATCG AGTTCCGGAA AGAGCTCCCC AAAACCAATG TAGGCAAGAT ACTCCGGCGC
GCATTACGCG AGGAAGAAAT GGCGAAAGTT AGCCAATAG
|
|---|
| Protein sequence | MTALSKDTYP WLENYPEGIP YEINPDAYSS LLEMMEVSFR ENAAKTAYAN MDKQLTFGQL
DELSQNFAAY LQSIGMKQGD RIALQMPNLL QYPVVMMGSL RAGLTIVNTN PLYTPREMQH
QFKDSGAKAI VILANFAANL EKVIANTNIE HVIITEIGDM LGFPKKLIVN AVVKYIKKMV
PAYHLKNTVT LANALSIGSG VTYEKPNVSG LDLAFIQYTG GTTGVSKGAM LTHRNLIANV
EGINEWLMSK MRTSETTGQL TLIGALPLYH VFAMTINGLC GIKWGALNVL ITNPKDIPAF
VKELKKYTFH IFPGLNTLFN GLLNNPEFAS VDFSNLRITI AGGMALQKIV AERWEKATGC
PLVEGYGLSE TSPVLSVNPL NGKHKQGTIG LPFPSTEMRI LSEDNKWLPI GERGEICAKG
PQIMLGYYNR PDETAKVILE DESGRWFKTG DIGIEDADGF FKIVDRKKDM ILVSGFNVYP
NEIEDVVAQC PGVAEVACVG IPDEKSGEMV KIFVVKKDPE LTEEKLKTYC KENLTGYKCP
RRIEFRKELP KTNVGKILRR ALREEEMAKV SQ
|
|---|
| |