| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2954 |
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| Symbol | |
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| ID | 8226527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 3617518 |
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| End bp | 3618924 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644930784 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003087334 |
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| Protein GI | 255036713 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.126198 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGAGA AAAATTTCGG AGAAAGGAAG GATTATATGA AGGAGACACT GCTCAGGTTC
GAAAGAATGC TGAAAACCAG CGAGCCGGCC TTTTTCGATT TGGATACTTA CGAAAAGGTT
ACAGTACATT ACATAGAAAA AGGGGATTGG GAAAAGGCGT TTAAAGCCTG TGAGATGGGA
CTGTCGGATT ACCCCTATTC GCTCGACCTG CTGCTTAGCA TGGTACAGCT GCACGCCAAC
CGCGGCGAGC ACGAATCAGC CCTCGAAATT CTGGAACGCG CATCGCTCTT TCACCCCGGC
GACATCGAAA TTTCATTCAT GCAGGTGGCG GTGGCCAATA TGATGGGTGA ATATGAAGAG
GCGATCGAAA TCCTCGAAAA CCTGCTCGGA AGGGTAGAGG ACCGGGATGA GATCTATTTT
CAGATCGGGC AGACTTACCA GAACTGGGGC AAATATGAGG ATGCGATCAA GTATTACAAA
CGCTCGCTCC GCAACAATCT GAACAATGAG AATGCGCTTT ACGAACTGGC CCATTGCCTC
GACCTGGTAG GGCAGCTGGA AAGCCATTTA GGATATTACA ATGATCTCGT CGATCGTGAC
CCGTTCTCGC ATCACGCGTG GTACAACCTC GGCATTGCTT TCAGCAAACT GGAACGCCAC
GAGGATGCCG TGCACGCCTA CGAATACGCG ACGCTGATCA AGGACGATTT CGCCTCGGCG
TTTTTCCAGC TCGGGAATTC CTACATGAAC CTGGAAAAAT TCGAGGATGC CAAAGTGCAA
TACCTGCGCG CGATCGAGCT GGAAGGCAAT CAGCCGGAAA CCTGCTGCTG CCTGGGTACC
TGCTACGAGA AACTGGGCGA ATTTGAGACA GCCATTAAAT ACTACCGCCA AACCGTGAAG
CTGGACAGCC AGTGGGACGA TGGCTGGTAC GGCCTCGGCA TTTGTTTCAG TGAATTGGGC
CGTTGGTATG AAGCCGTAGG TTTCCTGCGG AAAGCGATCC AGATCACCGA ACTGAACCCG
GATTACTGGT TGGCATTAGC CGAAACGGAG TTCAAAGTAG GTAATGTCGT TTCGGCATTC
GAAGCATTCG AAAAAGCAGC GGAAATCGAG CCTTCGAATC CGGATATCTG GCTGAAATGG
TCGTATGTGC TGTTTGAGCA AGGCAACTAC GCCCGCGCTT GCGACTTATT GCAGGCGGCG
ATCGACGAAA TGTCGGAAGA GGCAGATTTG TATTACCGGA TGGCCGTTTA CCAGATCCAC
GCCGGTCAGT ACCGCGAAGC ATTGGTAAAC CTCGAAATCG GTTTGACGCT CGATTACGAC
GGCCACGAGC AGCTTTTCGA CTTTTTCCCA GATCTCGAAA AGCAAAAGGC ATTGTACCGC
ATTATCGAAC AATACCGCGA GAAATAA
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| Protein sequence | MMEKNFGERK DYMKETLLRF ERMLKTSEPA FFDLDTYEKV TVHYIEKGDW EKAFKACEMG
LSDYPYSLDL LLSMVQLHAN RGEHESALEI LERASLFHPG DIEISFMQVA VANMMGEYEE
AIEILENLLG RVEDRDEIYF QIGQTYQNWG KYEDAIKYYK RSLRNNLNNE NALYELAHCL
DLVGQLESHL GYYNDLVDRD PFSHHAWYNL GIAFSKLERH EDAVHAYEYA TLIKDDFASA
FFQLGNSYMN LEKFEDAKVQ YLRAIELEGN QPETCCCLGT CYEKLGEFET AIKYYRQTVK
LDSQWDDGWY GLGICFSELG RWYEAVGFLR KAIQITELNP DYWLALAETE FKVGNVVSAF
EAFEKAAEIE PSNPDIWLKW SYVLFEQGNY ARACDLLQAA IDEMSEEADL YYRMAVYQIH
AGQYREALVN LEIGLTLDYD GHEQLFDFFP DLEKQKALYR IIEQYREK
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