Gene Dfer_2939 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_2939 
Symbol 
ID8226512 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp3603287 
End bp3603898 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content50% 
IMG OID644930769 
Productfumarylacetoacetate (FAA) hydrolase 
Protein accessionYP_003087319 
Protein GI255036698 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.494423 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATTA TTTGTGTAGG CCGGAATTAC GCAGAGCATA TCGCCGAACT GAACAACCAG 
ACACCCGATT CCCCGGTTAT ATTTCTGAAA CCTGAAACCG CACAACTCCG CCCGGGCGAG
GACTTTTACT ACCCGGAATT TTCAAAAGAC GTTCACTACG AAGTGGAGCT CGTAGTGAAG
ATCAACCGGG CAGGGAAGAA CATCGAAGAG AAATTCGCAC ATAAATATTA TAGCGAGATC
GGCATTGGCG TGGATTTCAC GGCCCGCGAT CTCCAATCGG AGCTGAAATC GAAAGGCCTG
CCGTGGGAGC TCGCGAAGGC ATTCAACGGC TCGGCGCCGG TTTCGGATTT TGTGCCGGTG
TCGGATTTTG GTGATATTCA GGACATTAAT TTCAGCCTGG ATGTGAATGG CGAAACGCGC
CAAAGTGGAA ATTCATCGAT GATGATCTAC CGCATTAACT ACCTGATTTC CTTCGTTTCC
AAATACTTCA TGCTCAAAAC GGGTGACCTC ATCTTCACAG GCACGCCAAA AGGCGTGGGT
CCGGTGCAGA TCGGCGATAA GCTGACGGCC TCGATTGAAG GCAAGAAGAT GCTCGAACTG
TTCGTTAAGT AA
 
Protein sequence
MKIICVGRNY AEHIAELNNQ TPDSPVIFLK PETAQLRPGE DFYYPEFSKD VHYEVELVVK 
INRAGKNIEE KFAHKYYSEI GIGVDFTARD LQSELKSKGL PWELAKAFNG SAPVSDFVPV
SDFGDIQDIN FSLDVNGETR QSGNSSMMIY RINYLISFVS KYFMLKTGDL IFTGTPKGVG
PVQIGDKLTA SIEGKKMLEL FVK