| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2874 |
|---|
| Symbol | |
|---|
| ID | 8226447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 3540789 |
|---|
| End bp | 3542384 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644930704 |
|---|
| Product | Na+/H+ antiporter |
|---|
| Protein accession | YP_003087254 |
|---|
| Protein GI | 255036633 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0025] NhaP-type Na+/H+ and K+/H+ antiporters |
|---|
| TIGRFAM ID | [TIGR00831] Na+/H+ antiporter, bacterial form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00000139579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0106447 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCTCG AGAATTTACT GCTCATTATT TCACTCCTCT TTGTGGTGTC GATGCTGACA
ATGCTGAGCG AAAAGATCGG GATTTCCTAC CCTATTTTCC TCGTTATAGC CGGCCTGCTG
ATCAGCTTTG TTCCCGGGAT GCCGCATTTG CAGCTCGAAC CCGACTGGGT GTTTCTCATC
TTCCTGCCGC CGCTGCTTTA CGAAGCTGCC TGGAACACTT CGTGGAAGGA TTTCTGGGCG
TCGCGGCGGG CGATCGGCCT GCTGTCCATC GGGCTGGTCG TGTTCACGGC CACGGCAGTT
GCCTACATTA CGCACGCGCT CATTCCGGGC TTCACGCTGG CAATGGGCTT CGTGCTTGGC
GGCATTATCT CCCCTCCCGA CGCCGTGGCT GCCACCTCGG TGCTGCACGG CCTGAAAGTC
CCCAAACGGG TGGTGACCAT CCTCGAAGGC GAGAGTCTCG TAAACGACGC ATCGTCGCTG
ATCGTATTCC GCGTTGCCCT CGCAACGATC GAAACCGGCA ACTTTGTCCT CTGGAAAGCC
GGGGCCGATT TCTTGATGGT CGCAGTGATG GGGGTCGTCA TCGGCCTGGC GATCGCGCAC
GTACTCTACG TGGTACACCG CTTTTTCCCC ACAACACCCA GCATCGACAC CGCGCTTACA
TTCATTTCAC CTTACCTGAT GTACATCACC GCCGAGCATT TTCACTATTC GGGTGTGCTT
GCCGTGGTGA GCGGCGGCTT GTTTCTGAGC TTCCGGGCCC ACGAGTTGTT CACGTACCAG
TCGCGGATGC AGACCAACTA CGTTTGGCAA ACGGTGGTCT TCCTGTTGAA CGGCATTGTA
TTCATCCTCA TTGGCCTGCA ATTGCCCGAG GTGATCAACG GGCTCAACGA GTACACCACG
AGCGAAGTGG TGAGTTACGC GGTCATTATC AGCATTGTTA CCATTCTCAT CCGCATCATC
TGGGTTTTTC CCGGAACTTA CCTGCCCAGG ATTCTTTCCA AATCGGTGCG CCAGAGAGAG
CCGAAACCCA GCTGGCAAAC CGTCTTCATC GTCGCATGGA GCGGAATGCG CGGGGTGGTA
TCGCTGGCGT CCGCATTGGC CATACCGCTG CTCGTGAATG GCCAGCCGTT CCCGCACCGC
AACCTGTTCC TGTTTATCAC GTTTGTGGTG ATCCTTTTTA CGCTGGTGTT CCAGGGGCTG
AGCCTGCCGT ACTTAATCAA ATGGCTGAAA ATCGAAGACG ATGATGATAG TCTGGAAAAA
GAGAATGCCA TGATGAACTC CCGCCTGGCA ACGGTGAGCC TGGACTATAT GAAATCCAAT
TACGACGGCG AAATACAGGA TTTCGAGCCG TTCAGGCTGC TGAAAGAGCG ATATGAGAAA
ATCGTGGAGA TGGCCGACTA CAAACTGCTG CATTCAGAGG ATAACAAATC GATCAGCCAC
GTGCGCAAAT ACCGCCGGAT GCTCCTGGAA ATTATTGATG TAAAAAGAGA GGAAATCCTG
AAACTGAGGC AGGAAAGAGC TTGCTCCAAC GAGCTGATCC GAACGAAGGA ACACGAACTC
GATCTCGAAG AAGCAAGGCT CCGTAGGTCA CCCTGA
|
|---|
| Protein sequence | MILENLLLII SLLFVVSMLT MLSEKIGISY PIFLVIAGLL ISFVPGMPHL QLEPDWVFLI
FLPPLLYEAA WNTSWKDFWA SRRAIGLLSI GLVVFTATAV AYITHALIPG FTLAMGFVLG
GIISPPDAVA ATSVLHGLKV PKRVVTILEG ESLVNDASSL IVFRVALATI ETGNFVLWKA
GADFLMVAVM GVVIGLAIAH VLYVVHRFFP TTPSIDTALT FISPYLMYIT AEHFHYSGVL
AVVSGGLFLS FRAHELFTYQ SRMQTNYVWQ TVVFLLNGIV FILIGLQLPE VINGLNEYTT
SEVVSYAVII SIVTILIRII WVFPGTYLPR ILSKSVRQRE PKPSWQTVFI VAWSGMRGVV
SLASALAIPL LVNGQPFPHR NLFLFITFVV ILFTLVFQGL SLPYLIKWLK IEDDDDSLEK
ENAMMNSRLA TVSLDYMKSN YDGEIQDFEP FRLLKERYEK IVEMADYKLL HSEDNKSISH
VRKYRRMLLE IIDVKREEIL KLRQERACSN ELIRTKEHEL DLEEARLRRS P
|
|---|
| |