| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2838 |
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| Symbol | |
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| ID | 8226411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 3503010 |
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| End bp | 3503780 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644930668 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_003087218 |
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| Protein GI | 255036597 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.936397 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.224474 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATATCG TTAATTTATT CGATCTTACC GGAAAGACCG CATTGGTAAC CGGCTGCAAT
CGCGGCATCG GGAAGGCCAT GGCTGAGGCA CTTGCCGAAG CGGGGGCCGA TATCATCGGT
GTAGCGTCGT CGGAGTTTAA GGAAGGTAAC GAAACAGAAC GCGCAATCCT GCAAACGGGA
AGGAAATTTT ATCCCTACCA GGCCGACCTG GGCGACCGGG AGAAGCTCTA TCTTTTTATC
AACCAGGTCA AAAAAGACCA TCCGGTAATT GACATCCTGA TTAACAATGC TGGAATTATC
CTTCGGCAAC CTGCTGCGGA ACACGCGGAT GATTATTGGG ATAAAGTTTT GAATATCAAC
CTCGACGCAC CTTACATTCT CGCACGCGAG CTGGGAAGAG AGATGATCGC CCGGGGATCG
GGCAAGATCA TATTCACGGC ATCGCTGCTC ACTTTCCAGG GAGGCATTAA TGTGCCGGGC
TACACGGCGT CCAAAAGCGC CATTGGAGGT CTGGTAAAAG CATTGGCGAA CGAATGGGCC
GGCAAAGGCG TGAATGTGAA TGCCATAGCG CCGGGCTATA TCAATACCGA CAACACCGAA
GCATTGCGCA ACGATCCGGT CCGCAGCAAA TCCATCCTCG ACCGCATTCC GGCCGGGCGC
TGGGGATTGC CGGAAGATTT TAAAGGCCCG ACGCTATTCC TGGCCTCGGG CGCAGCCAGT
TATGTACACG GAACCATCCT TACCGTCGAC GGCGGCTGGA TGGGCCGCTG A
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| Protein sequence | MNIVNLFDLT GKTALVTGCN RGIGKAMAEA LAEAGADIIG VASSEFKEGN ETERAILQTG
RKFYPYQADL GDREKLYLFI NQVKKDHPVI DILINNAGII LRQPAAEHAD DYWDKVLNIN
LDAPYILARE LGREMIARGS GKIIFTASLL TFQGGINVPG YTASKSAIGG LVKALANEWA
GKGVNVNAIA PGYINTDNTE ALRNDPVRSK SILDRIPAGR WGLPEDFKGP TLFLASGAAS
YVHGTILTVD GGWMGR
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