Gene Dfer_2578 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_2578 
Symbol 
ID8226150 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp3183292 
End bp3184323 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content53% 
IMG OID644930409 
Productpseudouridine synthase, RluA family 
Protein accessionYP_003086960 
Protein GI255036339 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.728308 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGAAG ATCCAGTTGA AATTACCTCC GACGAGGACG ATTTATTTGA ACATTACCGC 
ATTGTCGCCG ACAAAGGCCA GAGCCTGATG CGGCTCGATA AATACCTGAA TCTTCATGTA
GCCAACGCTT CCAGGACAAA AATACAAAAC GGCATCGAAG CAGAAGCGGT GCGTGTGAAT
GGCCAGCCGA CCAAAGCCAG CTACAAGGTG AAGCCGTTCG ATGTAGTTAC GCTCTCATTG
CCCCAGCCGC CGCGCGATAC CGAGATCATC CCCGAGAACC TTCCGTTGGA CATCATTTAT
GAGGACGATG TACTGCTGAT CGTCAACAAA GCCGCTGGAA TGGTTGTACA CCCGGCTTTT
GGCAACTGGA CGGGCACGCT GATCAATGGC CTCGTTTACC ATTTCCAGCA ACTGCCTACC
GGGCGCAATG GCGAAGGCCG CCCCGGTCTC GTGCACCGGA TCGACAAAGA TACTTCCGGC
CTGCTCGTGA TCGCGAAAAC AGAATTTGCG ATGACATTCC TCGCCAGCCA GTTTGCCGAT
CACTCAATAG AACGCACCTA CCACGCATTG ATCTGGGGCG AACCCAAAGC CGAAAAAGGC
ACCATTACCG GCCATGTCGG ACGCAGCGCG CGCGACAGGC GTGTGATGGA TGTGTATGTC
GACGGAAGCC AGGGAAAGCA CGCTGTAACG CATTATGAGG TGATCAAACC GCTTCGGTAC
GTATCGCTGA TCAAATGTAA CCTGGAAACC GGGCGCACGC ACCAGATACG CGCGCACATG
AAGCACATCG GCCACCCGAT CTTCAACGAC CCAATGTATG GCGGTGACAA GATCCTGCGC
GGCGGTTCAA GCGGCAGTTT CAAAGCGATG GTCGAAAATG CATTCGGCCT TATCTCCGGC
CAGGCGCTTC ATGCCAAATC ATTGGGATTT ATACATCCTA CTACACGAAA ATGGATACAG
TTCGACACCG AACTACCCGA AGGATTTCGA GCTATCCTCG AAAAGTGGGA AAACTACGTA
AACTCTCAGT AG
 
Protein sequence
MSEDPVEITS DEDDLFEHYR IVADKGQSLM RLDKYLNLHV ANASRTKIQN GIEAEAVRVN 
GQPTKASYKV KPFDVVTLSL PQPPRDTEII PENLPLDIIY EDDVLLIVNK AAGMVVHPAF
GNWTGTLING LVYHFQQLPT GRNGEGRPGL VHRIDKDTSG LLVIAKTEFA MTFLASQFAD
HSIERTYHAL IWGEPKAEKG TITGHVGRSA RDRRVMDVYV DGSQGKHAVT HYEVIKPLRY
VSLIKCNLET GRTHQIRAHM KHIGHPIFND PMYGGDKILR GGSSGSFKAM VENAFGLISG
QALHAKSLGF IHPTTRKWIQ FDTELPEGFR AILEKWENYV NSQ