Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_2578 |
Symbol | |
ID | 8226150 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 3183292 |
End bp | 3184323 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644930409 |
Product | pseudouridine synthase, RluA family |
Protein accession | YP_003086960 |
Protein GI | 255036339 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.728308 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGAAG ATCCAGTTGA AATTACCTCC GACGAGGACG ATTTATTTGA ACATTACCGC ATTGTCGCCG ACAAAGGCCA GAGCCTGATG CGGCTCGATA AATACCTGAA TCTTCATGTA GCCAACGCTT CCAGGACAAA AATACAAAAC GGCATCGAAG CAGAAGCGGT GCGTGTGAAT GGCCAGCCGA CCAAAGCCAG CTACAAGGTG AAGCCGTTCG ATGTAGTTAC GCTCTCATTG CCCCAGCCGC CGCGCGATAC CGAGATCATC CCCGAGAACC TTCCGTTGGA CATCATTTAT GAGGACGATG TACTGCTGAT CGTCAACAAA GCCGCTGGAA TGGTTGTACA CCCGGCTTTT GGCAACTGGA CGGGCACGCT GATCAATGGC CTCGTTTACC ATTTCCAGCA ACTGCCTACC GGGCGCAATG GCGAAGGCCG CCCCGGTCTC GTGCACCGGA TCGACAAAGA TACTTCCGGC CTGCTCGTGA TCGCGAAAAC AGAATTTGCG ATGACATTCC TCGCCAGCCA GTTTGCCGAT CACTCAATAG AACGCACCTA CCACGCATTG ATCTGGGGCG AACCCAAAGC CGAAAAAGGC ACCATTACCG GCCATGTCGG ACGCAGCGCG CGCGACAGGC GTGTGATGGA TGTGTATGTC GACGGAAGCC AGGGAAAGCA CGCTGTAACG CATTATGAGG TGATCAAACC GCTTCGGTAC GTATCGCTGA TCAAATGTAA CCTGGAAACC GGGCGCACGC ACCAGATACG CGCGCACATG AAGCACATCG GCCACCCGAT CTTCAACGAC CCAATGTATG GCGGTGACAA GATCCTGCGC GGCGGTTCAA GCGGCAGTTT CAAAGCGATG GTCGAAAATG CATTCGGCCT TATCTCCGGC CAGGCGCTTC ATGCCAAATC ATTGGGATTT ATACATCCTA CTACACGAAA ATGGATACAG TTCGACACCG AACTACCCGA AGGATTTCGA GCTATCCTCG AAAAGTGGGA AAACTACGTA AACTCTCAGT AG
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Protein sequence | MSEDPVEITS DEDDLFEHYR IVADKGQSLM RLDKYLNLHV ANASRTKIQN GIEAEAVRVN GQPTKASYKV KPFDVVTLSL PQPPRDTEII PENLPLDIIY EDDVLLIVNK AAGMVVHPAF GNWTGTLING LVYHFQQLPT GRNGEGRPGL VHRIDKDTSG LLVIAKTEFA MTFLASQFAD HSIERTYHAL IWGEPKAEKG TITGHVGRSA RDRRVMDVYV DGSQGKHAVT HYEVIKPLRY VSLIKCNLET GRTHQIRAHM KHIGHPIFND PMYGGDKILR GGSSGSFKAM VENAFGLISG QALHAKSLGF IHPTTRKWIQ FDTELPEGFR AILEKWENYV NSQ
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