Gene Dfer_2246 details

Gene Information

• Locus tag: Dfer_2246
• ID: 8225818
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dyadobacter fermentans DSM 18053
• Kingdom: Bacteria
• Replicon accession: NC_013037
• Strand: -
• Start bp: 2758213
• End bp: 2761467
• Gene Length: 3255 bp
• Protein Length: 1084 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 644930082
• Product: multi-sensor hybrid histidine kinase
• Protein accession: YP_003086633
• Protein GI: 255036012
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 17
• Fosmid unclonability p-value: 0.692403
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCCAGCC AGTCAAATAC AGTTTTCCGG GGGAATTCCC AAATGCATGC CTTATGCCGG 
CAGCTGGAAT GGGAAAATAC CGTCCTGGGC CCTGTTGCCG ACTGGTCGCA AAGCTTGCGC 
ACGGCGGCAG CTCTGGTACT CGCTGCGCCA TTCCCGAACC TGCTGCTATG GGGTGAGGAT 
CTTATACAAA TCTACAACGA TGCCTACCTC GAAATCATGG GCGACAAGCA TCCGGGCGGG 
CTGGGACAAC CTGTCCGGCA GAGCTGGGCA GACGCGGGAG ATGTTCATGA GCCTACCTAC 
CACCGCGTTT GGGCTGGGGA ATCGCTTACG TTTGAAGATG TGCCCCAGGC AATCACCAGG 
GCTGGAAGTT TACAGGAAGC CTGGTATACG ATTGCATACA GTCCGGTCCG GGATGATTCC 
GGAAATATGG GAGGCATATT GGTCGCAGCT TTCGAGACGA CAAACCAGTT ATTGGAAAGA 
AAGGAACGCG AAAATGCATT ACAGGAGCTG GCTCAAAGCG AGGAACGGTT CGCCCGGTTG 
GTAGGTGCTA CTTCCGACAT TATCTACACC ATGAGCGCCG ACTGGCGGCA CATGATCCAA 
CTGGACGGGA AGGAATATCT GCAAAGCACC ATGACGCTGA ACGGGACCTG GATGGAAGAA 
TACATCCCGG AAGAAGAGCG GCTGCGGGTA TGGACGGTCA TTCAGCATGC GATTCAACGG 
AAAACTACTT TCGAGGTTGA GCATCAGGTA TTTCGGCGCG ATGGCACGGT GGGATGGGTT 
TTCTCCCGTG CGGTGCCAAT TTTGGATAAA AACGGGGCGA TCCGCCAGTG GGTAGGCGCT 
GCCAGCGATA TTACATCGCG CAAGCGGGAC GAACGCCGGC AGGATTTTAT GCTGCGGCTG 
GTAGACCGGC TCCGACCGCT TGCCGAACCT GAGCAGGTAG CCGATATGGC CTGCCAAATG 
CTCGTGGAGC ACTTGAATGC CAGCCGCGCC CAATATACCG AAGTAAAGGG GACAGCCGGA 
AAGGAAGTGG GGACCGTTCG CGGGGAATAT GTGCTTACAG GGCGCCCGAT GATACGCGAG 
TACGCTTACG CCGGTTTCGG TGAGCCGATG GTGGCCATTT TGCGGTCCGG GCAAACGCTG 
GTCATTACCG ACACCGACAA TGACCAAAGG CTCACCGACG AGCAAAAGCA ATCCTATGCA 
GCAGTGGATT CCCCGGCGGC CATCGCTGTT CCGTTGGTGA AGCATGGCAA CATGGTCGGG 
ACCTTTACCA TTCACCATTC CGCGCCGCGC GAATGGTCCG CGGAGGAAAT TGCGATAACG 
GAGGAAATCG CCGACCGCAC CTGGACCGCC GTTGAAAGGG CAAAGGCCGA AGAGCTATCC 
CGCATCTCGG AAAAACGCCT GCGTTTGGCC ACCGAGGCGG CAGACATGGC TACCTGGGAG 
TGGGATTTGG TGAGCAACCT CGTCATTTGG AATGAACAAC ACTTCCGGAT CTTCGGCTTG 
TCGCCGCAGG AAGCCCCCGT ACACCCGGAG CTATTCTTCC GGCATATCCA CCCCGACGAC 
CGCGACCGGG TTTACGCCCT TTTGCAACGA TCCATACAAG AGGATGTGGA ATTTGATACG 
GAATTCCGTG CAGTGCGCGA GGACGGTGTG GGGCTGTGGA TCAGCGGTTA TGGCAGGGTG 
ATGGAGCGGA ACCAGAGCGG GCCGATCCTG ATGAGCGGCA TCATGCTCGA TATCACGGCA 
CGCAACGAGT CGGAGGCAGC GCTGCACCGT ATCCAGGCAC GGCAAGGCGC CATTCTCGAA 
AGCGCCAAGG ACTATGCCAT ATTTACACTT GACCTGGGCC TGCGCGTCCG CGACTGGAAC 
TCCGGGGCTG AGCACGTACT CGGGTATTCC GAAGCCGAAA TTATAGGCAA GTCCGGGGAG 
ATATTCTTCG TGCCCGAAGA CCGTGCGGAG GGAGCGCCGG AATATGAAAA GAACAAAGCG 
ATCCAGGAAG GCCGTGCGGA GAACGAACGC TGGCACCTCC GCAGCGATGG CTCCCGCTTT 
TATGGGTCCG GCATCACGAG CCCGTTGCTG GATGAAGCGG GTAATTTGAT TGGTCTTCTC 
AAAGTAATGC GCGACCTGAC GATGCAAAAA CAGACGGACG AGGCATTGAA AATAGCAGAC 
AAGCGCAAAG ACGAATTCCT CGCCATGCTC GCCCACGAAT TGCGTAATCC GCTGGCCACC 
GTCCGCAACG GCATTTCATT GCTGAAAGTG ACCCGGCAAA ACGATGCGCA AATGTCCGAC 
GTCGTCGATA TGATGGACCG GCAGGCCACG CACCTGGTGC GGATGATCGA CGATCTGCTG 
GATGTCAGCC GGGTTACACA GGGCAAAATC CAGCTGCAAC TGGAACGCCT GGACATGGCG 
GCACTGATAA ACAGCGCTGT CAAAAGCATC CGGTCACAAT ATGAAGCCCG CAGGAAAGTG 
CTCGACGTTC AGACGGGCTT TGCGAAGCTC ATCGTCGAGG GTGATGCAAC CAGGCTATCG 
CAGGTCGTGA CTAACCTTTT AACCAACAGC CTCCGCTATA CCGGTGACGA AGGGCACGTT 
TGGGTAACCC TAACCAGCCA GGATGGGGAG GCGGTTATCC GCGTCAGGGA TAATGGAATA 
GGCCTCACGC CGGAACAGCA GACGTCCGTT TTCGAATTGT TTGTACAAGG CGATAATTCC 
CTCGCCCGCA CACAAGGTGG CCTGGGCATC GGGCTCACGA TCGTGAGGCA GCTCGTGGGA 
ATGCATGGAG GTAGGGTAGA AGCCAAAAGC CCGGGGATAG GAATGGGCAG TGAGTTTACG 
ATTTATCTGC CTTTATTGGA ATCAAACACG CACAAAACAA CGGTGGAAAA CGACCTTTCG 
AAAAAATCCC GATTACAGCA CATTCTGCTC ATTGATGACC TTGAAGATCT CGCTGTTACA 
ACGGCCATGC TGCTGAAAAT CAAGGGTTAC CAGGTCGATA TCCGCACCAG TGGCAAGGCC 
GGTGCAGAGG CTGTCGAAGC CATAAGGCCT TCGGTTGTTC TCTGTGACAT CGGGATGCCT 
GAACTAGATG GTTACCAAAC CGCGCAGCTC ATCCGCAGCG GCCGCTGGGG AGGCGATGTC 
ATCTTGCTCG CATTGTCGGG CTACGGCCAG GAAGAAGACA AGCAGCAAGC CATGGAAGCA 
GGTTTCGACG GACATTTAAC AAAGCCGGTC GACATGAACG AGCTGCAAAG CCTGATACAG 
CGCCTGACGC GGTGA 

 

Protein sequence

MASQSNTVFR GNSQMHALCR QLEWENTVLG PVADWSQSLR TAAALVLAAP FPNLLLWGED 
LIQIYNDAYL EIMGDKHPGG LGQPVRQSWA DAGDVHEPTY HRVWAGESLT FEDVPQAITR 
AGSLQEAWYT IAYSPVRDDS GNMGGILVAA FETTNQLLER KERENALQEL AQSEERFARL 
VGATSDIIYT MSADWRHMIQ LDGKEYLQST MTLNGTWMEE YIPEEERLRV WTVIQHAIQR 
KTTFEVEHQV FRRDGTVGWV FSRAVPILDK NGAIRQWVGA ASDITSRKRD ERRQDFMLRL 
VDRLRPLAEP EQVADMACQM LVEHLNASRA QYTEVKGTAG KEVGTVRGEY VLTGRPMIRE 
YAYAGFGEPM VAILRSGQTL VITDTDNDQR LTDEQKQSYA AVDSPAAIAV PLVKHGNMVG 
TFTIHHSAPR EWSAEEIAIT EEIADRTWTA VERAKAEELS RISEKRLRLA TEAADMATWE 
WDLVSNLVIW NEQHFRIFGL SPQEAPVHPE LFFRHIHPDD RDRVYALLQR SIQEDVEFDT 
EFRAVREDGV GLWISGYGRV MERNQSGPIL MSGIMLDITA RNESEAALHR IQARQGAILE 
SAKDYAIFTL DLGLRVRDWN SGAEHVLGYS EAEIIGKSGE IFFVPEDRAE GAPEYEKNKA 
IQEGRAENER WHLRSDGSRF YGSGITSPLL DEAGNLIGLL KVMRDLTMQK QTDEALKIAD 
KRKDEFLAML AHELRNPLAT VRNGISLLKV TRQNDAQMSD VVDMMDRQAT HLVRMIDDLL 
DVSRVTQGKI QLQLERLDMA ALINSAVKSI RSQYEARRKV LDVQTGFAKL IVEGDATRLS 
QVVTNLLTNS LRYTGDEGHV WVTLTSQDGE AVIRVRDNGI GLTPEQQTSV FELFVQGDNS 
LARTQGGLGI GLTIVRQLVG MHGGRVEAKS PGIGMGSEFT IYLPLLESNT HKTTVENDLS 
KKSRLQHILL IDDLEDLAVT TAMLLKIKGY QVDIRTSGKA GAEAVEAIRP SVVLCDIGMP 
ELDGYQTAQL IRSGRWGGDV ILLALSGYGQ EEDKQQAMEA GFDGHLTKPV DMNELQSLIQ 
RLTR