| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2159 |
|---|
| Symbol | |
|---|
| ID | 8225731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 2641648 |
|---|
| End bp | 2642430 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644929996 |
|---|
| Product | exodeoxyribonuclease III Xth |
|---|
| Protein accession | YP_003086547 |
|---|
| Protein GI | 255035926 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0708] Exonuclease III |
|---|
| TIGRFAM ID | [TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00188855 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCGA TGAGGATTGC CACTTATAAT GTGAATGGTG TAAACGGGCG CCTGCCGGTG
CTGCTTCGCT GGCTGACAGA GACCACGCCC GACGTCGTTT GTTTGCAGGA GCTGAAAGCG
CCGCAGGAAA AATTCCCCGA ACAAGCCATC CTGGAAGCCG GCTACAAGGC AATATGGCAT
GGACAGAAGA GCTGGAACGG CGTTGCGATC CTTTCGCGCG GCGATATACC TGCCGAAATC
CGGCGTGTGC TGCCCGGTGA TCCTGAGGAT GCCCACAGCC GCTATATCGA AGCCGAGATC
GGCGGATTGA CCGTCGGCGG GCTCTACCTG CCCAACGGCA ACCCCGCGCC CGGGCCGAAA
TTCGACTACA AACTCCGCTG GTTCGACCGC CTGATCACCC ACGCCCAGGG GCTGCTCGCT
GCCGGGAAGC CCGTGCTGCT CACCGGCGAT TTCAATGTAA TGCCTACGGA GCTGGATGTT
TACAAACCCG AAAGCTGGGT CGACGACGCC CTTTTTCGCC CCGAAACCCG CGCCGCATTT
GCAAAACTGA TGGACCAGGG CTGGACCGAC GCGATCAGAA CCTTGTACCC GGACGAGAAG
ATCTACACGT TCTGGGATTA TTTCCGCAAT GCATTCGCCC GGAATGCCGG CCTGCGCATT
GACCATTTTC TACTCAGCCC GAACCTCGCG CCGAGGCTCA TCGCCGCCGG CGTGGACAAG
CAGGTACGCG GCTGGGAGAA AACCAGCGAC CACGCGCCGG TTTGGATAGA ATTAAAGGAT
TAG
|
|---|
| Protein sequence | MNAMRIATYN VNGVNGRLPV LLRWLTETTP DVVCLQELKA PQEKFPEQAI LEAGYKAIWH
GQKSWNGVAI LSRGDIPAEI RRVLPGDPED AHSRYIEAEI GGLTVGGLYL PNGNPAPGPK
FDYKLRWFDR LITHAQGLLA AGKPVLLTGD FNVMPTELDV YKPESWVDDA LFRPETRAAF
AKLMDQGWTD AIRTLYPDEK IYTFWDYFRN AFARNAGLRI DHFLLSPNLA PRLIAAGVDK
QVRGWEKTSD HAPVWIELKD
|
|---|
| |