| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1835 |
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| Symbol | |
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| ID | 8225406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 2257308 |
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| End bp | 2259323 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644929685 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_003086237 |
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| Protein GI | 255035616 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.314511 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACA GCTATTTCCT TCCTCGCACG ACCTTCAAGA AGGGCATCAC CGTTCCCAGC
CTGTTGTTTA TCCTGGCAGT CACTTTTCTG GCCAGTTTTT TTCCACAAGT CACGGGTACG
CTGCTGGCGC AAATGAAGGA TTGGATATTT GTCAATTTAA ATTGGGCTTA TGTCTGGTCG
GTCACCATTT TCGTGTTTTT CCTGCTGGCG CTGGTTTTCA GTAAATTCGG TTCGATTACG
TTGGGCGATA ACGACGCCGT GCCCGAGTAT TCTTTCTTTT CTTGGATTTC GATGCTGTTT
GCGGCTGGAA TGGGCATCGG TTTGATGTAT TTCAGCGTAT CCGAACCGTT ATCGCATTTT
TCTGATCCAA CCTTCGGGCA GATGGACCAG ATTGCCCGTT CCAAAAACGC GCAGCTGTAT
ACCTTTTTTC ACTGGGGCAT TCACGCCTGG GCGATTTACG GGGTGGTGGG ACTCTCGCTG
GCCTATTTTA CTTACCGCTA TAAGCTGCCC CTGTCGCTGA GAAGTTGCTT TTACCCGATT
TTGAAAGACC GGCTCAACGG CACCGCGGGC GACGCGATCG ACACTTTTGC ACTATGCAGT
ACTTTCTTCG GTATCACCAC CACGCTGGGC TTTGGCGTGG TGCAGCTCAG TGCCGGACTG
GTGGAAGTAG GGCTTATCGA GAGTTCTGGG TTTTCATCAC AAATCGTGAT TGTGCTTGTA
ATCATGGCTA TTTCGATTTT TTCGGCCACC ACCGGCGTGA GCAAGGGCGT CAAGTTTCTG
AGCCAGTTGA ACATCACCGG TGCGGTCCTG TTGATGCTGT TTGTACTCAC GTTCGGGCCA
ACCGTTTTTC TGATGGGCAC GCTCTCCGAA GGCATAGGCG ATTACCTGAA CCAGTTTTTA
AGCTTAACAT TCAATACCCA TGCCTACGAG CCCGAACGGC AGCCATGGTA CTTTCAATGG
ACAATCTTAT ACTGGGCATG GTGGATCTCC TGGGCGCCGT ACGTAGGGCT GTTTATTGCC
GGGATCTCCC GCGGCAGGAC TATCCGGGAG TTTATCTGCG CGGTATTGAT CCTTCCTACC
GCATTCAACT TCCTGTGGAT GACAGTCTTC GGGAATTCTG CGATCTGGTT TGACCAGCAC
GAGGCCGCCG GGCAGCTCAG CAGTCTCACG GCCAATGCCG ACGAGCTGCT GTTCCGTTTT
CTGGATTATT TGCCCGCTCC CGGACTTAGC AGCAGTTTTT CCATCTTCAT CATATTTGTA
TTTTTTGTGA CATCGGCCGA CTCCGGGATA TTTGTGATCA ACAGCATTGC CTCCCACAAT
GCCGAAAAGT CACCCAAATG GCAGCTCGTC TGCTGGGGGG CGCTGCTTGC GTTGCTTGCG
CTGGTGCTGT TGAATGCCGG CGGCTTGCAA TCCTTGCAGA CGATGACGCT GATCACCGCA
TTGCCTTTTT CGGTGGTGAT GATCCTTTTT TGTTACTGTC TGGTACGGGC GCTGGTGGTC
GATAGCTACT ATTATAACAC AGACTTTTCA CCGGCAACCA GCTATTGGTC AGGTGAGTTG
TGGAAAGAGC GGCTGCACAG AATCGTGTCG GTGAAAACGT CCGAAAACGT GGAAGAATAC
ATAGGCACCA CGGTACGCGG CGCATTGGCG GAACTGGCGG CAGAGTTTAA CAGCAAAGGG
ATCACCGCGG GCATCGACTT CCGGGCCAAC CCGACAGATG TATCGCTCAC GATCCGGCAC
AAGCAAATCG AGGACTTTGT CTACGGCGTT CGCAATGAGA GCCGTCTGGT TTCCAGCGTA
TTGGTGAAAG AGGTTAATGT TCCAAACGTC AGGAAAGATC AGGCCAACAT ACCCATGAGC
TACTTCGGCG ACAACCGAAT CGGCTATAAT GTCGCGTATT TCACCGAAAA GGAAATCATT
GCCGATGTAC TGAAACAATA CGAGCGGTTT CTGGAATTGT CCTCAGATGT CAGAAATGAA
ATATTTACAG ATATCGCTTC CAAACGCAGG AATTGA
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| Protein sequence | MKNSYFLPRT TFKKGITVPS LLFILAVTFL ASFFPQVTGT LLAQMKDWIF VNLNWAYVWS
VTIFVFFLLA LVFSKFGSIT LGDNDAVPEY SFFSWISMLF AAGMGIGLMY FSVSEPLSHF
SDPTFGQMDQ IARSKNAQLY TFFHWGIHAW AIYGVVGLSL AYFTYRYKLP LSLRSCFYPI
LKDRLNGTAG DAIDTFALCS TFFGITTTLG FGVVQLSAGL VEVGLIESSG FSSQIVIVLV
IMAISIFSAT TGVSKGVKFL SQLNITGAVL LMLFVLTFGP TVFLMGTLSE GIGDYLNQFL
SLTFNTHAYE PERQPWYFQW TILYWAWWIS WAPYVGLFIA GISRGRTIRE FICAVLILPT
AFNFLWMTVF GNSAIWFDQH EAAGQLSSLT ANADELLFRF LDYLPAPGLS SSFSIFIIFV
FFVTSADSGI FVINSIASHN AEKSPKWQLV CWGALLALLA LVLLNAGGLQ SLQTMTLITA
LPFSVVMILF CYCLVRALVV DSYYYNTDFS PATSYWSGEL WKERLHRIVS VKTSENVEEY
IGTTVRGALA ELAAEFNSKG ITAGIDFRAN PTDVSLTIRH KQIEDFVYGV RNESRLVSSV
LVKEVNVPNV RKDQANIPMS YFGDNRIGYN VAYFTEKEII ADVLKQYERF LELSSDVRNE
IFTDIASKRR N
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