| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1391 |
|---|
| Symbol | |
|---|
| ID | 8224962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 1640925 |
|---|
| End bp | 1641968 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644929251 |
|---|
| Product | ApbE family lipoprotein |
|---|
| Protein accession | YP_003085803 |
|---|
| Protein GI | 255035182 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0161542 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACCG GAATACTCAG CCTGATGGGC AAATACCGGC ATAGGGCTGG GCTAGCGATG
GTACTGATGT GCCTGTCAAT GAGTGCGTTA ATGCCTGACA AACTGCGCAC TTTCCAAATC
ACCGGCGAGG CGCAGGGGAC CACCTATGCC ATTACTTACT ATGCCAAACG GCAGCTGGCT
ACCAAAAGGG AGATCGACAG TGCTTTTAAA AGCCTCGACG CGTCCCTGTC CATTTACGAC
CCCAGCTCGC TGATCAGCCG TTTCAATGCT TCCCAAAAGG GCATTGAAAT GGACCTTCAT
TTTTCGAAGG TGATCGCAAA ATCCTTGCAG ATCTATCGCG AAACGGGCAG CCTGTTCGAT
ATAACGGTGT ACCCGCTTGT GCGCGCCTGG GGGTTCGGCA CCGCGGCCCC GGTGGCCATG
CCCGACAGCG CCAGCATCCG TACGCTTTTG GAATGTGTAG GTTCGGATAG GCTGGAAATC
CAGGGTAACC GGCTTTTGAA AACTGGACCG TGCGTGCAGG TCGATGTGAA TGGGATCGCG
CAGGGCTATT CGGTAGATGT CATTGCGCGG TTTCTGGAAG CGAGAGGCAT TGCCGATTAC
ATGGTGGAAG TGGGAGGGGA GATCCGGACG CGCGGCCTGA AACACCCGGG TGGAGAGCCG
ATGCGGATCG GGATTGAAAC ACCCTCGGCG ACCGGCTTTG CCGCGCCCGT GATCCGCGAG
GTGATCAGCA TTGGCGACGG GGCCGTTACC ACGTCGGGCA GCTACCGGAA GTTCCGCGAA
TCGGGCGGTG TGCGGCTTTC CCACATCATC GACCCGGCAA CTGGCTTCCC CGTCCGGCGC
GAGATCATCA GCGCAACCGT AGTAGCACCC GACGCGATCA CCGCCGACGG TTTCGACAAT
GCACTGCTCG CTGCTGGCAT CGACGGGGCG TTTGAAATAC TCAAAACTCA TCCTGAAATG
CAGGTCTACC TGATCTACAA AAAGCCCGAC GGCACAATTG CGGACACGGC TTCCGCTGGC
TTTGGCCGCT ACATTGTCCG CTGA
|
|---|
| Protein sequence | METGILSLMG KYRHRAGLAM VLMCLSMSAL MPDKLRTFQI TGEAQGTTYA ITYYAKRQLA
TKREIDSAFK SLDASLSIYD PSSLISRFNA SQKGIEMDLH FSKVIAKSLQ IYRETGSLFD
ITVYPLVRAW GFGTAAPVAM PDSASIRTLL ECVGSDRLEI QGNRLLKTGP CVQVDVNGIA
QGYSVDVIAR FLEARGIADY MVEVGGEIRT RGLKHPGGEP MRIGIETPSA TGFAAPVIRE
VISIGDGAVT TSGSYRKFRE SGGVRLSHII DPATGFPVRR EIISATVVAP DAITADGFDN
ALLAAGIDGA FEILKTHPEM QVYLIYKKPD GTIADTASAG FGRYIVR
|
|---|
| |