| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1235 |
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| Symbol | |
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| ID | 8224806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1467137 |
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| End bp | 1467883 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644929097 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_003085649 |
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| Protein GI | 255035028 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.176862 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0316242 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGGAGCCAG TCAGGATCAA CAAGTTTATC AGTGAAACCG GTTTCTGTTC AAGAAGGGAA
GCCGACAAGC TCGTGGAGCA GGGGAGGGTT ATGTTGAACG GCCGGAAAGC AGTTTTGGGT
GATAAGGCAA CGACTTCGGA CGATGTGCGC GTGGATGGTA AGCCGCTCAA AGCCAAAAAG
GCGGGCGTCT ACATTGCATT CAACAAACCC GTGGGCATTA CCTGTACCAC CGAGCGGCAT
ATCAAAGGCA ACATCATCGA CTACATCCGG CACAAGGAGC GCATCTTTCC CATTGGCCGG
CTCGACAAGC CGTCGGAAGG ACTGATATTC CTCACCAGCG ACGGTGACAT TGTAAACAAG
ATCCTCCGGG CGGGGAACAA CCACGAGAAA GAGTACGTGG TGACGGTCAA CAAGCCGATC
ACACCCGAAT TCATACAAAA AATGTCGTCC GGCGTCCCCA TTTTAGGGGT TGTAACTAAG
AAATGCTTTG TCCGGAAAGA CAGCAGCTAC GTTTTTACCA TCATTCTCAC GCAGGGCCTC
AACCGCCAGA TCCGCCGGAT GTGCGAGTTC CTTGGCTACA ATGTGACGAA GCTGAAACGC
GTCCGGATCA TGAACGTTAC GCTCAAAGAC CTTCCCGTGG GCAAGTGGCG CGACCTGACA
GCCGCGGAAA TGCAGGAGAT CAATGCGGCG ATAGCCGGTT CGACGAAAAC GGAAGAAGGG
TCGTACCTGG ACGACTGGGA CGAATAG
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| Protein sequence | MEPVRINKFI SETGFCSRRE ADKLVEQGRV MLNGRKAVLG DKATTSDDVR VDGKPLKAKK
AGVYIAFNKP VGITCTTERH IKGNIIDYIR HKERIFPIGR LDKPSEGLIF LTSDGDIVNK
ILRAGNNHEK EYVVTVNKPI TPEFIQKMSS GVPILGVVTK KCFVRKDSSY VFTIILTQGL
NRQIRRMCEF LGYNVTKLKR VRIMNVTLKD LPVGKWRDLT AAEMQEINAA IAGSTKTEEG
SYLDDWDE
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