| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1150 |
|---|
| Symbol | |
|---|
| ID | 8224721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 1368882 |
|---|
| End bp | 1370690 |
|---|
| Gene Length | 1809 bp |
|---|
| Protein Length | 602 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644929012 |
|---|
| Product | putative inner membrane protein translocase component YidC |
|---|
| Protein accession | YP_003085564 |
|---|
| Protein GI | 255034943 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.333218 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00602156 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAA ATTTTGTAAT CGGCCTGGTC TTGATCATGC TGATGCTGAT AGGCTACCAG
ATACTGGTTC CCAAACCCGT GGAACCTACT CCGGTGGCGG AGGTGAAGAA GGAGGTTTCC
AAACCCTCGT CTGTCACTTC GGATACTACC CAGAATTCCT CACAATCAGT TGATTCCCTC
GCAATTCCGC AAAAGGACCT GGTGATCGAA ACGAAGGACG CCCGCGTGGT TTTTACCAAC
AAAGGCGGGG TAATGAAAGA GGTGATGTTG AAAAACTACA AAACCTACGA TCAGAAACCC
CTTTACCTGA TCGCCGAAAA CCATAACAAG TTCCAGATCG ACCTGCCTAC GCAGACCGGC
GACGTAAGGC TTACTAACCA GACCTTCACG ACCGACGCAC AGGACCGCAC CCTTGCGGAA
GGCGATTCGG CGGTGATTAC TTACCGTGCG ACGATTAAGA ATAATCAAAC GGTTGAGCAG
ACCTACGTAG TGCGGGGCAC CGGCTACGTG ATCGACTACG GCATTAAAGC CAGCGGCGCA
TTGCCGGCCA ACAAGTCGGT TGAATTCCAT TGGGATAACG ACCTGCTCCA ACTGGAAAAC
GATATGAAGA AAAACCGTGA AGTAGTGACC GTAAACTACT ACACGGACGA ACTGAAAAGC
CTGGCCACCA GCCCGACTTC CAACGAGGAA GAAAAGACGG CCGATCCGGT TAAATGGTTC
ACCATCAAGC ACAAATACTT CCTGGCGGGC CTGATCGCCG AAAAACATCC GCTCACGAAC
GTCACCGTGC GTGCAAACGT GAACCCGGAG GATTCGGTGA TCGTGAAAAA TATGAACGTT
TTCGCGGGCA TTCCCACGGC AGCGGTTCAG AAAGGCGAAG CGAACTTCCA GTTTTACCTC
GGCCCGAACG AATACCACAT CGTAGACAAA GTGAAGGCCG AGAACTTCGA CCAGAACGTT
TACCTCGGTT ACGCATTCCT GAAACCGATC AACAAATTCT TCCTTGTTCC GCTTTTCAAC
CTCATCGAGG GATTTGTGAG CAATTATGGC TTGCTGATCA TCCTGCTGGT ATTGTTTGTT
AAAACGCTGC TCACGCCGCT GACTTACAAA TCGTACATCA GCATGGCGAA AATGCGTATC
CTGGGGCCGG AACTGGAACA AATCCGGGAG CAAAACAAAG ACGACCTCGC GAAACAGCAG
CAGGAGCAAA TGAAGCTTTA CCAGCAGGTA GGGGTAAGCC CGCTGAGCGG CTGTGTGCCC
GTGCTGGCTA CGATGCCCAT CCTGTTCTCG CTCTTCTTCC TCTTTCCGAA CCTGATCGAG
CTGCGGCAGC AATCGTTCCT GTGGGCGGAT GACCTTTCTA CGTACGATTC GTTCTTCAAG
CTGCCGTTCG AAGTGCCGTT CGGCATCGGT AACCACATCA GCTTGTTCAC CATCCTGATG
ACGGCTTCCA GCATCGGTTA CGCCTATTAC AACAACCAGA ACACGCCTAC ACAACCCGGA
CCGGTGAATA TGAAGGCGCT CGGGTACGTG ATGCCGCTGA TGTTCATGTT CATATTGAAC
TCTTTCCCGG CTGGTTTGAC GTTCTACTAC TTCGTTTCGA ACGTCGTGAC TATCGCTCAG
CAGCTGTTGA TCAAACGGTT TGTGAATGAG GATAAAATCA AAAATATCCT GGAAGAAAAC
CGCAAGAAAA ACGCGACCGG CGAGAAAAAA CAGAGCAAAT TCCAGAAGTA CCTCGAAAAA
TCGTTGCAGG CTGCGGAAGA AGCAAAAAAG AAGCAGGCTG AATTAGAGAA AAAGACAAAA
AAGAAATAA
|
|---|
| Protein sequence | MDKNFVIGLV LIMLMLIGYQ ILVPKPVEPT PVAEVKKEVS KPSSVTSDTT QNSSQSVDSL
AIPQKDLVIE TKDARVVFTN KGGVMKEVML KNYKTYDQKP LYLIAENHNK FQIDLPTQTG
DVRLTNQTFT TDAQDRTLAE GDSAVITYRA TIKNNQTVEQ TYVVRGTGYV IDYGIKASGA
LPANKSVEFH WDNDLLQLEN DMKKNREVVT VNYYTDELKS LATSPTSNEE EKTADPVKWF
TIKHKYFLAG LIAEKHPLTN VTVRANVNPE DSVIVKNMNV FAGIPTAAVQ KGEANFQFYL
GPNEYHIVDK VKAENFDQNV YLGYAFLKPI NKFFLVPLFN LIEGFVSNYG LLIILLVLFV
KTLLTPLTYK SYISMAKMRI LGPELEQIRE QNKDDLAKQQ QEQMKLYQQV GVSPLSGCVP
VLATMPILFS LFFLFPNLIE LRQQSFLWAD DLSTYDSFFK LPFEVPFGIG NHISLFTILM
TASSIGYAYY NNQNTPTQPG PVNMKALGYV MPLMFMFILN SFPAGLTFYY FVSNVVTIAQ
QLLIKRFVNE DKIKNILEEN RKKNATGEKK QSKFQKYLEK SLQAAEEAKK KQAELEKKTK
KK
|
|---|
| |