Gene Dfer_1077 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1077 
Symbol 
ID8224648 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1273875 
End bp1275272 
Gene Length1398 bp 
Protein Length465 aa 
Translation table11 
GC content53% 
IMG OID644928939 
ProductRNA methyltransferase, TrmA family 
Protein accessionYP_003085491 
Protein GI255034870 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000901811 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.660905 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTAAGA GTAACAAGTA CGAGTACGTT GAAATTACCG ATTTTGCGGC AGAAGGCAAA 
TGTATATTTA AATCGGAAGA CGGCGTAATC TTTGTAGAAG GAAATGTGGC TCCCGGTGAC
ATCGTCGATC TTCAGGTGGT CCGCACGAAG AAGAAATTGA AGGAAGCGAT CGTCACCAAA
ATCCATTCGC AATCCCCGCT ACGTACGGAA CCCTATTGCG AACATTTCGG GTTTTGCGGG
GGCTGTAAGT GGCAGCATAT CGGCTACGAC CACCAGCTCA GGTTCAAAAG GCAGCAGGTT
GTGGATCATT TTGAAAGGAT AGGAAAGATC AGGAATGTTG AGATCAACGA GATTCTCGCT
GCCCCTAAGA CTGAATATTA CCGCAATAAG TTGGAATTCA CTTTCTCGAA CTGGCGCTGG
CTGACCAAGG AGCAGCTCGA TTCGGGACAG CCTTTTGCTA AAACCGCGCT GGGATTCCAC
GTGCCAAAAC GTTTTGACAA AATCTTCACC GTAGACCACT GCCACCTGCA ACCCGACCCG
TCGAATGCGA TCCGCAATTC GCTGCACCGT TTCTCGGAGG AAAAGGGCTA TCCTTATTAT
GATGTCCGTT TCAATGTGGG TGTTATGCGC AATGTGATCA TCCGCACAGC CAACTCCGGC
GACGTGATGG TGATCGTGCA ATTCGGCGAG CAGAACGACG ATATTATTGC AGAAGTGATG
GCGTTCCTGC ATGAGAACCA CCCGGAAATC ACCTCGCTGA ATTACATCGT GAACTTAAAG
GGGAATGATT CCTACCAGGA TCAGGAAGTG ATCCATTACG CGGGAGATAA GGTGATCCGT
GAGACAATGG AGGACCTGAC GTTCCTGGTC GGGCCGAAAT CGTTTTACCA AACGAACTCC
GAGCAGGCCT ACAAACTGTT CAGCGTCGCC CGCGACTACG CACAGCTGAC GGGCAACGAA
TCGGTTTACG ATCTTTACAC GGGAACGGGC ACAATTGCCA ACTTCGTCGC GCGCAGCGCC
AAAAAAGTGG TAGGCGTGGA ATATGTGGAA GCAGCGGTCC AGGACGCCCG CATTAACTCC
CAACTGAACG GCATTACCAA CACTGCATTC TTTGCCGGCG ACATGCGCGC GATTATGAAC
GAGAGCTTCC TGCACACGCA TGGCCGCCCC GACGTGATCA TCACCGACCC GCCGCGCGCG
GGCATGGACG TGCCCGTGAT CGAAACGATC CTCAAAGCCG CCCCCGACCG CGTCGTGTAC
GTTAGCTGCA ATACGGCTAC CCAGGCACGG GATCTGGCGC TAATGTCGGA AGACTACGAA
GTCACCCGCG TGCAACCGGT AGATATGTTC CCGAACACGC ACCATGTGGA GAACGTGGCG
TTGCTGGTTA GGAAATAG
 
Protein sequence
MSKSNKYEYV EITDFAAEGK CIFKSEDGVI FVEGNVAPGD IVDLQVVRTK KKLKEAIVTK 
IHSQSPLRTE PYCEHFGFCG GCKWQHIGYD HQLRFKRQQV VDHFERIGKI RNVEINEILA
APKTEYYRNK LEFTFSNWRW LTKEQLDSGQ PFAKTALGFH VPKRFDKIFT VDHCHLQPDP
SNAIRNSLHR FSEEKGYPYY DVRFNVGVMR NVIIRTANSG DVMVIVQFGE QNDDIIAEVM
AFLHENHPEI TSLNYIVNLK GNDSYQDQEV IHYAGDKVIR ETMEDLTFLV GPKSFYQTNS
EQAYKLFSVA RDYAQLTGNE SVYDLYTGTG TIANFVARSA KKVVGVEYVE AAVQDARINS
QLNGITNTAF FAGDMRAIMN ESFLHTHGRP DVIITDPPRA GMDVPVIETI LKAAPDRVVY
VSCNTATQAR DLALMSEDYE VTRVQPVDMF PNTHHVENVA LLVRK