Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_1077 |
Symbol | |
ID | 8224648 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 1273875 |
End bp | 1275272 |
Gene Length | 1398 bp |
Protein Length | 465 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644928939 |
Product | RNA methyltransferase, TrmA family |
Protein accession | YP_003085491 |
Protein GI | 255034870 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00000901811 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.660905 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTAAGA GTAACAAGTA CGAGTACGTT GAAATTACCG ATTTTGCGGC AGAAGGCAAA TGTATATTTA AATCGGAAGA CGGCGTAATC TTTGTAGAAG GAAATGTGGC TCCCGGTGAC ATCGTCGATC TTCAGGTGGT CCGCACGAAG AAGAAATTGA AGGAAGCGAT CGTCACCAAA ATCCATTCGC AATCCCCGCT ACGTACGGAA CCCTATTGCG AACATTTCGG GTTTTGCGGG GGCTGTAAGT GGCAGCATAT CGGCTACGAC CACCAGCTCA GGTTCAAAAG GCAGCAGGTT GTGGATCATT TTGAAAGGAT AGGAAAGATC AGGAATGTTG AGATCAACGA GATTCTCGCT GCCCCTAAGA CTGAATATTA CCGCAATAAG TTGGAATTCA CTTTCTCGAA CTGGCGCTGG CTGACCAAGG AGCAGCTCGA TTCGGGACAG CCTTTTGCTA AAACCGCGCT GGGATTCCAC GTGCCAAAAC GTTTTGACAA AATCTTCACC GTAGACCACT GCCACCTGCA ACCCGACCCG TCGAATGCGA TCCGCAATTC GCTGCACCGT TTCTCGGAGG AAAAGGGCTA TCCTTATTAT GATGTCCGTT TCAATGTGGG TGTTATGCGC AATGTGATCA TCCGCACAGC CAACTCCGGC GACGTGATGG TGATCGTGCA ATTCGGCGAG CAGAACGACG ATATTATTGC AGAAGTGATG GCGTTCCTGC ATGAGAACCA CCCGGAAATC ACCTCGCTGA ATTACATCGT GAACTTAAAG GGGAATGATT CCTACCAGGA TCAGGAAGTG ATCCATTACG CGGGAGATAA GGTGATCCGT GAGACAATGG AGGACCTGAC GTTCCTGGTC GGGCCGAAAT CGTTTTACCA AACGAACTCC GAGCAGGCCT ACAAACTGTT CAGCGTCGCC CGCGACTACG CACAGCTGAC GGGCAACGAA TCGGTTTACG ATCTTTACAC GGGAACGGGC ACAATTGCCA ACTTCGTCGC GCGCAGCGCC AAAAAAGTGG TAGGCGTGGA ATATGTGGAA GCAGCGGTCC AGGACGCCCG CATTAACTCC CAACTGAACG GCATTACCAA CACTGCATTC TTTGCCGGCG ACATGCGCGC GATTATGAAC GAGAGCTTCC TGCACACGCA TGGCCGCCCC GACGTGATCA TCACCGACCC GCCGCGCGCG GGCATGGACG TGCCCGTGAT CGAAACGATC CTCAAAGCCG CCCCCGACCG CGTCGTGTAC GTTAGCTGCA ATACGGCTAC CCAGGCACGG GATCTGGCGC TAATGTCGGA AGACTACGAA GTCACCCGCG TGCAACCGGT AGATATGTTC CCGAACACGC ACCATGTGGA GAACGTGGCG TTGCTGGTTA GGAAATAG
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Protein sequence | MSKSNKYEYV EITDFAAEGK CIFKSEDGVI FVEGNVAPGD IVDLQVVRTK KKLKEAIVTK IHSQSPLRTE PYCEHFGFCG GCKWQHIGYD HQLRFKRQQV VDHFERIGKI RNVEINEILA APKTEYYRNK LEFTFSNWRW LTKEQLDSGQ PFAKTALGFH VPKRFDKIFT VDHCHLQPDP SNAIRNSLHR FSEEKGYPYY DVRFNVGVMR NVIIRTANSG DVMVIVQFGE QNDDIIAEVM AFLHENHPEI TSLNYIVNLK GNDSYQDQEV IHYAGDKVIR ETMEDLTFLV GPKSFYQTNS EQAYKLFSVA RDYAQLTGNE SVYDLYTGTG TIANFVARSA KKVVGVEYVE AAVQDARINS QLNGITNTAF FAGDMRAIMN ESFLHTHGRP DVIITDPPRA GMDVPVIETI LKAAPDRVVY VSCNTATQAR DLALMSEDYE VTRVQPVDMF PNTHHVENVA LLVRK
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