| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0811 |
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| Symbol | |
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| ID | 8224380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 961327 |
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| End bp | 964377 |
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| Gene Length | 3051 bp |
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| Protein Length | 1016 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644928682 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003085236 |
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| Protein GI | 255034615 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000353149 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTCCT GCTCCCTGCT CATGGCGCAG CAGGTGATTG TGAAGGGAAA AGTGACAGAC
AACTCCGGCG TCGGGCTCCC CGGTGTGAAC GTGGTTTTGA AGGGCAATAC GAGCGGGACT
TCCACGGACC AGAATGGCGA TTACAACCTC GCGCTTCCTG GCGGTGCCGG CGAAAACCAG
GTACTTGTAT ATTCTTTTAT AGGTTACGTG CGGCAGGAAA TTGCCGTAGC AAACCGGACG
AGCATTGATG TAACCCTGGC TGTGGATTCT CAAAATCTGG ACGAGGTGGT CGTGGTCGGT
TACGGAACCA CAGCCAAGAA AAACCTGACG ACGGCGATCG CCAAAGTGGA CCCTACGAAA
ATTCCTACTT CGGCCAATAA CAACGTTTCC GAACTGCTCT TCGGCCGTGC GGCCGGCTTG
CAGGTAACAC AGCAAAGCTC GCAGCCGGGC GGTAACATTT CCGTTTCGAT CCGCGGGAAA
GGCAATCCAT TGCTGGTAAT CGACGGCGTG GTAATCCCGG GCGACGCAAT GGAGCCGGGC
AATGGTTCGG TGGAAATACA GGGCGTCAAC CGCGGTGGGC TCGGCGGACT GAACCCGAAT
GATATCGAAT CGATCGAATT CCTGAAAGAT GCAAGCGCGG CGATTTACGG TGTATCGGCA
GCCAACGGGG TAATGATCAT TACGACCAAA AAAGGAAAAG CCGGGCGGAT GAATGTGAGC
TACGACGGGA GCCATTCGTT CACGAGAAAT ATGCCCTACC TGAAACCGCT CAATGCGACG
GACTATATGC GGTACTACAA TGAACTGAGC AGGGACAAAT ACCAGTCCGA CCGCAATATG
GGGCCATTTG GGAATGTGCC GGTAGACCTG AGCGGCTACA CCCAGCGCTA TTCGGAGCAG
GACATTCAGA ATGCCGGGGA AGGCACCGAC TGGCTGGGCC AGGTGCTGCG GCCGGGCAGC
ATCGATAACC ATAATATCAG CGTCAACGGA GGAACGGAAA AAGCAACATA CTTTTTCTCC
GGCAACTATT TCAACCAGGT GGGATCGATG AAAAACTCGG ACCTGAGACG GTTTTCGGGC
AGGTTGAATG TGAGTTTTGT TTTGAGCAAA ATTTTCAGGC TGAATGTAAA TGTGAATGCC
AACCGCAATG CTTATGCCAA TCCGCAGGCC GGGTGGCAAA CGGGCGGCTC GGGCACGCAG
GGTTTCAATG CTTTGCAGGC GGCGCTGGCC TATCCTTCTT CGGTGCCGGT GTACAATGCC
GACGGCAGTT ACAGTCAGTT CGCCGTTACG GGCAACCCTG TTTCGTTGCT GGATATCAAG
GACAAGACAA AGGCTCAGGG CCTGCTGGCA AACACTTCGC TGGATATTGA CATTATCCCT
AACACATTGA CGGCCAAATT GCTATACGGA AATAACACTG AGAATTCGAC CCGTGATTTC
TACATTCCCA GCGACGTTTT CTGGGGACAA TTATACAGAT CGCGTGCTTC CCTGGCTGAA
ACGCGCCGGC AAAACCAGAC GATGGAAGCG ACCATGTCGT ACAAAAAATC ATTCGGCGAT
TGGCTGAACC TGGACGTGGT AACCGGCGTA GGCCAATACC TGGAAGACTT CTCAGGTTTC
AGTGTCGAAA CGTCGATGAC ACAAGATGCG ATCAATACGG ATAACCTGGG CGCGGCAACC
GGCCCCAAAA TCATCGGTTC CTACCGCGGC GTCAACAAGC TCCGTTCCTT CTTTATTCGC
AGCAATTTCG ACATCCTCGA TCGTTTCCTG CTCTCGCTTA CAGTCCGCCG GGACGGTGCC
GACAAGTTTT TCCCTAACAA CAAATACCAG TATTTCCCAT CGGTGTCAGC GGGATGGAAG
ATCAATAACG AGGCATTTAT GCAGGATATC AAGGTAATCA GCACATTGAA GCTCCGTGCC
AGCTATGGTA CTACCGGCGA ACGCCCGGGA AGTGTGGCTT ATGGTGCTTT TGCTGCTGAT
CCCAATGCAG TTACCTTCAA CAATGGCTCA GTGGTGTATT TCCCTTACCG GCTTACTGCA
TTTGACAACC CCAACCTGCG CTGGCCCATT ACGAAGACAT TCAATGCCGG TCTGGACTTT
GGGTTATTTA AAGAGCGGAT CACCGGTTCG GTGGATGTTT TTACAGAAAA CAGGACCCGC
CTGCTCAGCA GCGCTACCAC GCAGCAATTG TCGATCATCT CCACGTCGCC TATCAACGGC
GGCCACCAGC GTCGCAAGGG TTTCGAGGTA AGTGTGAATA CTGAAAATAT CAAAACCAAC
GATTTCAGCT GGAATTCCAC GATTAATGTG ACGCACTTCA AAAACCGCTG GGTGAAGCGC
TTTCCCAATG ATCCGCCTGC ACAATACGGC CGGGTAAATG ATCCGGTGGG CAACGATATT
ATTTATGTGT ACCAAACCAA TGGTATCCTG CAAGCCGGAC AGGAAGTGCC TGCCTGGCAG
CCAGCCTCGG CCTCCAAGCC CGGGAACCCG GTTTTTGTCG ACAACAATGG GGACGGAAAA
CTGGATTTCA ACGATGTGAA AAGCTTCTCC GGCATTCCGA AGGCGATCAT CGGTTTTGGA
AACAATTTCA CTTATGGAAA ATTTGACCTG AGCGTGTTTA TGTACGGTCA GTATGGCGCG
TGGGGCAACG ATTTTACCAC TTTATGGGGC GATCCTGTCG GGTTATTGTC TAACAACCAA
AGCGGTACGG AGCGGATCAA GGACGCTTGG AGTACTTCCA ACCCGACCGG TACCCTGCCC
GGCGCCGCTT ACAACGAAGC CGCGATCGCG CTAGATGCCG GCCTGGATAC GCGATTGGTA
AAACGCGATT TCCTGCGCTG CCGCAATATT ACATTGGGCT ATACGATCAA CTCGGGCGGA
CTGAGCAAGT ACGTGAGAAG TATCCGCGTT TTCGCCGATT TGCAAAACGC GTTCATCCTG
ACGGGTTTCA AAGGCGTGGA TCCTGAAATT CAGGCCAATT CCATCAAAGG CGGACCAGCG
CCCTACCCGA TGGTGAGAAC ATTATCGCTG GGTTTGCGGG CTAATTTTTA A
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| Protein sequence | MLSCSLLMAQ QVIVKGKVTD NSGVGLPGVN VVLKGNTSGT STDQNGDYNL ALPGGAGENQ
VLVYSFIGYV RQEIAVANRT SIDVTLAVDS QNLDEVVVVG YGTTAKKNLT TAIAKVDPTK
IPTSANNNVS ELLFGRAAGL QVTQQSSQPG GNISVSIRGK GNPLLVIDGV VIPGDAMEPG
NGSVEIQGVN RGGLGGLNPN DIESIEFLKD ASAAIYGVSA ANGVMIITTK KGKAGRMNVS
YDGSHSFTRN MPYLKPLNAT DYMRYYNELS RDKYQSDRNM GPFGNVPVDL SGYTQRYSEQ
DIQNAGEGTD WLGQVLRPGS IDNHNISVNG GTEKATYFFS GNYFNQVGSM KNSDLRRFSG
RLNVSFVLSK IFRLNVNVNA NRNAYANPQA GWQTGGSGTQ GFNALQAALA YPSSVPVYNA
DGSYSQFAVT GNPVSLLDIK DKTKAQGLLA NTSLDIDIIP NTLTAKLLYG NNTENSTRDF
YIPSDVFWGQ LYRSRASLAE TRRQNQTMEA TMSYKKSFGD WLNLDVVTGV GQYLEDFSGF
SVETSMTQDA INTDNLGAAT GPKIIGSYRG VNKLRSFFIR SNFDILDRFL LSLTVRRDGA
DKFFPNNKYQ YFPSVSAGWK INNEAFMQDI KVISTLKLRA SYGTTGERPG SVAYGAFAAD
PNAVTFNNGS VVYFPYRLTA FDNPNLRWPI TKTFNAGLDF GLFKERITGS VDVFTENRTR
LLSSATTQQL SIISTSPING GHQRRKGFEV SVNTENIKTN DFSWNSTINV THFKNRWVKR
FPNDPPAQYG RVNDPVGNDI IYVYQTNGIL QAGQEVPAWQ PASASKPGNP VFVDNNGDGK
LDFNDVKSFS GIPKAIIGFG NNFTYGKFDL SVFMYGQYGA WGNDFTTLWG DPVGLLSNNQ
SGTERIKDAW STSNPTGTLP GAAYNEAAIA LDAGLDTRLV KRDFLRCRNI TLGYTINSGG
LSKYVRSIRV FADLQNAFIL TGFKGVDPEI QANSIKGGPA PYPMVRTLSL GLRANF
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