| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0624 |
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| Symbol | |
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| ID | 8224193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 719667 |
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| End bp | 721379 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644928498 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_003085052 |
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| Protein GI | 255034431 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | [TIGR02456] trehalose synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00268544 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.845236 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAT TGCTCATCCG CCTCCTGCTC CTCGTGTGTG TGCCTATGCT TGCCTGTGCG
CAGGACAAAG TGGCACCACG GAAGTTCAAG GAGAATTTTT GGTATAAAAA CAGCATTATC
TACAATCTCG AAATAGGGGT ATTCAAAGAC AGCGACGGCG ATGGCCGGGG CGATATCAAT
GGCGTGATCC AGCAGCTCGA TTACCTCAAA ATGCTGGGCG TGGACGTGAT CTGGCTCGCG
CCGTTCCAGC CGTCGCCCGG CGCCGACGAC GGCTACGACG TGGCCGATTA TTACGGCGTA
GATCCCAAAT TGGGCACCAG CGGCGATTTC GCCGAGCTCA TGCATCAGGC ACGAAAACGG
GGCATGCGGA TCATCATGGA CCTGGTGATC AACCACACGT CCGACCAACA TCCGTGGTTC
AAAAACGCCC GCAGCGCACG CAACTCCCGC TACCGCGACT GGTACGTTTG GTCGCCCACC
AAGCCGCGCA ATGCCGATAA GGGAATGGTA TTTCCGGGTG TTCAAAAAAG CGTGTGGACG
CTGGATAGTG CCAGCAACGA ATACTACTAT CATCGTTTCT ACAAATTTCA GCCCGATCTC
AATTTCATGA ACCCGGAAGT GATGCAGGAG ACGCAGCGGA TCATCGGGTA CTGGCTCAAT
CAGGGCATTT CGGGCTTCCG GCTCGACGCC GTGCCATTCA TTATCGAAGT ACCGCATTCG
AACCCCGAAA AGCCTAAGCT CGACTTCGAT TTCCTGAAAG ACATCCGCCA GTTCACGCAG
TCGCGTCAAG CCGATGCCGC CATACTCGGC GAAGCGAATG TGGAACCTAA AGAAAGCGTC
AACTATTTCG GCGAAAACGG CGAGGGTATC CAGCTGATGT TCAATTTCTT TGCAAACCAG
CATTTGTTTT ATGCATTCGC TACCGGCGAC CTGGCACCGT TCAGGTCGGC GATGGAGGCC
ACTTCCGAAA TCAGCGAGAG CTCGCAATGG GCCTATTTCC TGCGAAATCA TGACGAAATA
GACCTCGGGC GGCTCACCGA CCGCCAACGC GAGCGCATTT ACGCCGCAAT GGGCCCCGAC
ACCAATATGC AATTGTACGA ACGCGGCATT CGCCGGCGCC TTGCCCCAAT GATGAACAAC
GATCGCCGCC GGCTTGAAAT GGCTTACAGC CTGCTGTTCT CACTGCCCGG CGCAACGGTG
ATCCGTTACG GGGAAGAAAT CGGGATGGGC GACGATCTCC GGCTCAAAGA ACGCCTCTCG
GTACGGACGC CCATGCAATG GAGCGCCGCT AAAAACGCAG GTTTCACCAC GGCCGACACG
GCATTCCGCC CGGTGATCAA TGAGGGTGAA TACGGTTTCC GGACCATTAA TGCCGAAAGC
CAGTGGCGCG ACAGCACTTC GCTGCTCCAC CGGGTGGCGG CCATTATGAA AATGCGGAAA
GCATGCCCGG AAATCGGGCT GGGCACTTCT ACGATCGTCG ACGCCGGCTC GAAAGATATC
CTTGCGATCC GTTATGACTA TGAAGGCAGG TCGATGCTAG TGCTGCACAA CTTCACCAAT
GCACCGCGAA AGGCCGATTT GACGGTGGGG AAAACCAAAT GGTACAATCT CTGGAACAGC
ACGGGCGATT ACGATGCAGC TAACGGACGT CTGGCGGTAG AATTGCCAGC TTACGGTTAC
AGCTGGTACC GGTCCGGCCA GGTTCTCCCC TGA
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| Protein sequence | MNKLLIRLLL LVCVPMLACA QDKVAPRKFK ENFWYKNSII YNLEIGVFKD SDGDGRGDIN
GVIQQLDYLK MLGVDVIWLA PFQPSPGADD GYDVADYYGV DPKLGTSGDF AELMHQARKR
GMRIIMDLVI NHTSDQHPWF KNARSARNSR YRDWYVWSPT KPRNADKGMV FPGVQKSVWT
LDSASNEYYY HRFYKFQPDL NFMNPEVMQE TQRIIGYWLN QGISGFRLDA VPFIIEVPHS
NPEKPKLDFD FLKDIRQFTQ SRQADAAILG EANVEPKESV NYFGENGEGI QLMFNFFANQ
HLFYAFATGD LAPFRSAMEA TSEISESSQW AYFLRNHDEI DLGRLTDRQR ERIYAAMGPD
TNMQLYERGI RRRLAPMMNN DRRRLEMAYS LLFSLPGATV IRYGEEIGMG DDLRLKERLS
VRTPMQWSAA KNAGFTTADT AFRPVINEGE YGFRTINAES QWRDSTSLLH RVAAIMKMRK
ACPEIGLGTS TIVDAGSKDI LAIRYDYEGR SMLVLHNFTN APRKADLTVG KTKWYNLWNS
TGDYDAANGR LAVELPAYGY SWYRSGQVLP
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