| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0288 |
|---|
| Symbol | |
|---|
| ID | 8223854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 325556 |
|---|
| End bp | 327511 |
|---|
| Gene Length | 1956 bp |
|---|
| Protein Length | 651 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644928166 |
|---|
| Product | peptidase M56 BlaR1 |
|---|
| Protein accession | YP_003084723 |
|---|
| Protein GI | 255034102 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG4219] Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.139173 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTGGA ACTTCATTGA TCAGCCCGCC GCACGCCAAT GGGTGGAAGC CATGTGCCTC
ATGCTCATGC ATTCGCTCTG GCAGGGGCTT GTGGCCGCCA TCCTGGCAGG AATGATCCTG
CTTACGACGC GGAAGAGCCG GCCCGCTTTC CGGTACAATC TGCTGGCAGG ACTGATGCTC
CTGTTCGTTG CCGGCACCGT GCTGACGTTC AACCTCACCT TGCGCGGCTC GCACGATGCA
CCGGCGGTGA CAACCGGCCT GGCCCGGGAA TGGGTTAATC AGGCCATTTT CCAGCATCCG
GCAAGCCCGG TAGTCGCTGC CACGGACGCG AACTGGATAG CGCTCATTAC CGGCTTTTTC
AGTGCCCATG CGCAGATGAT TGTGACGGTT TGGTTTCTGG TTTTTGCATT GAAATCCTTG
CAGGCTGCCA GCGGGCTGCT TTATCTGCAC AGGATCACCC GGTCGGTATC GGCACCGGGC
ATGCAATGGG TCGTCCGGTT CTATGAGCTT GCCGGGCGGA TGCAGGTGAA TCAGGAAATA
GAATTGCGGG AATCGGCGCA GATTGCCGTG CCGATGGTGA TCGGTTTTCT GAAACCGGTG
GTGCTGGTGC CGCTGGGCAT GCTGGCGAAT TTGCCGGCGG CGCAGGTGGA GGCCATTCTC
CTGCACGAGC TTGCGCACAT CCGCCGGCGC GATTACCTGG TGAACCTAGT CCAGATCTTC
TGTGAAAATG TGTTTTTCTT CAACCCGGCG GTTTTGTGGA TTTCCAAACT GATCCGCGAG
GAGCGCGAGC ATTGCTGTGA TGATCTGGCG ATCGGTGTCA TGCAAAACAA AACTTCGTTC
GTTCATGCCC TCGTATCATT TCAGGAATAC AACCAGTCGC GCCCGACATT TGAGATGGCC
TTTTCCCAAA AGCGTAACCA TTTGCTGGAC AGGATCAAAC GCATTATCAA TAACAATAAT
AAACCACTTG ATGCCATGGA AAAACTATTT GTAACATTCA GTCTGGCAGC GGCGATCACG
TTGTCGGCGG CAACTGCACC CGAAAAGCCG GCCATCCCAC GTGCTGTGTT TAAGCAGCCG
GAGAGTCGGA TGGCGGAGCT AAAAACGCCG GAAGCACAAA AAATTGCGGC TATTCAGGAA
CCAGACACGC TGCCCCGGAA AAAGCGGACC GACATGGCGA TTCATTCGGC GAACGTACGC
GGCGCACGCG AGGGGATCAG TACGTATAAT GTAACCCGTA ACGGCAGGCA GTATGAGATC
GTGAAGCGCA ATGGTAAAAT GGTTTCGCTA TGGGTCGACG ACCAGGAGAT CGCCGAAGGT
GATTATTCCA AATATCAATC CGAGATCGAC GAGATCATGG AGGAAATTAA AGTCCAGCAT
GAACTCGCCG AAAAACAGCG CGCAGAAGCC GAAGAAATGC GGAAACTGGC GGATGTGCAG
CGCCGCGAGG CAGAGAAGCA ACGCGAGGCA GCGAATGAAA TCCGGAAGCT GGCCGAAGTG
CAGCGGCGTG ACGCCGATAA ACAACGCGAA CAAGCACACG TAATGCGCCT GGAAGCGGAA
AAGCACCGGG AACAAGCCGC CCGGATACGC GTGGAAGCGG CCAAACAGCG GGAGCACGCG
GACGAGATGC GATTGCAGGC GGAAAAGCAC CGCCAATTGG CCGAGGAGCA GCGCAAACAA
GCCGACGGAA TGCGAAAGGA GGCCGAAAAG GAACGGGAAG CTTATGTGAA AAAGCAGGAA
GGCGTAATCG AGGAGCTGAT TAAGGGCGGG ATTGTGAAAA GCCGGGATGA TGTGTCGTTC
AAGCTGGCTG ACGATGAGCT GATTGTGAAT GGCGAAAAGC AGCCGGCCGA ATTGCACCAG
CGGCTTAAAT CGAAGTACCT GGGCGACGAT GCCGGAGGGA AAACGGAAAT GTATTACAAC
TTCAACGGCC GGTCGGGCTA TTCCAGAAGC CGCTAG
|
|---|
| Protein sequence | MNWNFIDQPA ARQWVEAMCL MLMHSLWQGL VAAILAGMIL LTTRKSRPAF RYNLLAGLML
LFVAGTVLTF NLTLRGSHDA PAVTTGLARE WVNQAIFQHP ASPVVAATDA NWIALITGFF
SAHAQMIVTV WFLVFALKSL QAASGLLYLH RITRSVSAPG MQWVVRFYEL AGRMQVNQEI
ELRESAQIAV PMVIGFLKPV VLVPLGMLAN LPAAQVEAIL LHELAHIRRR DYLVNLVQIF
CENVFFFNPA VLWISKLIRE EREHCCDDLA IGVMQNKTSF VHALVSFQEY NQSRPTFEMA
FSQKRNHLLD RIKRIINNNN KPLDAMEKLF VTFSLAAAIT LSAATAPEKP AIPRAVFKQP
ESRMAELKTP EAQKIAAIQE PDTLPRKKRT DMAIHSANVR GAREGISTYN VTRNGRQYEI
VKRNGKMVSL WVDDQEIAEG DYSKYQSEID EIMEEIKVQH ELAEKQRAEA EEMRKLADVQ
RREAEKQREA ANEIRKLAEV QRRDADKQRE QAHVMRLEAE KHREQAARIR VEAAKQREHA
DEMRLQAEKH RQLAEEQRKQ ADGMRKEAEK EREAYVKKQE GVIEELIKGG IVKSRDDVSF
KLADDELIVN GEKQPAELHQ RLKSKYLGDD AGGKTEMYYN FNGRSGYSRS R
|
|---|
| |