Gene Dfer_0077 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0077 
Symbol 
ID8223643 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp93879 
End bp94544 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content48% 
IMG OID644927956 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_003084513 
Protein GI255033892 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.301453 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.361737 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATAG CACTCATTGA TGACCACCAG ATTCTTTCCG ACGCCTTAAA AGTGAATCTG 
ATGCATTCGC TGCCAGAGAT CGAATCCATT CATCACTTCA ACTCATTTGA GCCTTACGCT
GCCGTCGCCG ACGATAGTAT CCCTACGATC GTAATTACGG AGCTTGCCTT CAATGGCAGA
TATGACAAAG GTGTTGACGC CATTTTTCGC CTCAACCTAA AGAATACCCA AATCATCGTC
CTCACCTCCC TGACCGACGA CTGGCTTATC CGCAGCTATA TGCGATTAGG CGCAAGGGCA
TTTTTGACGA AGACCTGCCA ATACAAAGAG CTCCTGGAAG CGATTACGCA GGTCCGGAAA
GGCAATTTGT TCTTGTCGGA ACATGTCCAA AACATACTGT TAACAAGAAT TGAAACCGGT
GGAATCTCGG CGGAATCCCT GTCCAGCGTC GAAAGGGCCA TAATGGAGGC ATTATCCCAG
GAAGAACCAC TGAAATCAAC CGCACAAAAA TTGAAAATCT CACTGATTGA GCTCAAATAT
CATCGTAAAA TGCTCATGAC CCGTTTCAAT GTCCGGAACT TCGCCGACCT CGTCGAGCTT
GCAAGAAGGC CGGGCTTTTT TACGGAATCG GCCGCTGAGA GATCGGCTGT CGAACACTCG
GTGTGA
 
Protein sequence
MKIALIDDHQ ILSDALKVNL MHSLPEIESI HHFNSFEPYA AVADDSIPTI VITELAFNGR 
YDKGVDAIFR LNLKNTQIIV LTSLTDDWLI RSYMRLGARA FLTKTCQYKE LLEAITQVRK
GNLFLSEHVQ NILLTRIETG GISAESLSSV ERAIMEALSQ EEPLKSTAQK LKISLIELKY
HRKMLMTRFN VRNFADLVEL ARRPGFFTES AAERSAVEHS V