Gene Dfer_0074 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0074 
Symbol 
ID8223640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp90870 
End bp92315 
Gene Length1446 bp 
Protein Length481 aa 
Translation table11 
GC content56% 
IMG OID644927953 
ProductDEAD/DEAH box helicase domain protein 
Protein accessionYP_003084510 
Protein GI255033889 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.588647 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAATTTCA ACGAATTTGA ACTCCACGAA GACGTGCTGA ACGCCGTGGA TTCCATGAAC 
TACCAACAGG CAACGCCTAT CCAGGAGCAG GCTATACCAC ACATTCTCAG CGGCAAAGAC
CTGCTCGCCT GCGCACAAAC AGGAACCGGC AAAACAGCCG CCTACCTGAT CCCCATTCTA
GACAAAGTTG CACACGAAGC CAACGAGCAC ACAGGCGCAT TGATCCTCGT GCCCACGCGC
GAGCTGGCCG TGCAGATCGA CCAGCAAATC CAGGGCCTCG GCTATTTCGT TGGCGCTACC
AGCATTGCGG TTTACGGAGG CAACAAAGGA CCCGAATGGG ACCAGCAGAA AAAAGCATTG
ACCCAGGGCG CCGACATTAT CATTGCCACG CCAGGCCGCC TGATTGCGCA TTTGCAATTG
GGCTACGTCC ATTTCCGCGA CCTGCGGCAC CTGGTCCTTG ACGAGGCCGA CCGCATGCTC
GATATGGGTT TCCTGGGCGA TATTCTGAAA ATCATGAGCT ACCTGCCCAA CGAGCGGCAG
ACACTGATGT TTTCGGCCAC GATGCCCCCC AAAATCGGCG ATCTGGCGAA GCGTATATTG
AAAGAGCCGG AAGAGATCAG GTTAGCGGTA TCACGCCCGG CCGATCGGAT TGATCAGCAG
TTCTACCTCG CGAAAGACGA ACAGAAACTG CCTTTGCTGA TGCATTTGCT GAAAGGCGTC
GAGAATATCA GCATGGTGCT GTTCACCTCC CGTAAATCGA ACGTGGAGCC CATCGTTCGC
GCGCTGCGCA AACTGGGCCT TGGTGCACAC GGCATCTCAT CGGATTCCGA GCAGGGTGAG
CGCGAAATTG TACTCCGTGA TTTCAAAAAC CGGCAATTTC CGATACTCGT GGCGACGGAC
GTGCTATCCC GCGGCATAGA TATTGATAAC CTAAGCCATG TGGTGAATTA CGACGTCCCC
CGCGACCCCG AGGATTACGT GCACCGCATT GGGCGCACGG CACGTGCCGA GTCAAAAGGC
ACGGCGATGA CGTTCATCAA TGAGCAGGAT CAGAAATATG TTTTGAAGAT CGAAAGGCTC
TTTGAAAAGG AATTGGAAAA GAAATCCCTC ACCGCGGAAC TGGGTTTAGG CGAAGCTCCT
TTGTTCGAGC CGCCACGGTT ACGGTCGGGA GGGCGTAATA AGAAAAACAG GAAGAAGCCT
GCACCCGGCG CACCTTCCGG GCGGAAACCA CATCGCGAGG CCAGGCCCCG GCAAGGTGGT
GACGCAGGAA CGGATTCGGC TGGTGTAGCG GCTGTTTCAT CAGGAACGCC TGCCGCAGGA
TCGCCTATCG CAGCGTCGGC TGCCGGAGGA ACGCCTCGCG GAGACGGTGC GCAGCGTAAG
CGTAGAAATA AGCGGCGGAG ACCTAAGAAG GATCAGTCCC AAACTGTAAA CCCCACTGAG
GCATAG
 
Protein sequence
MNFNEFELHE DVLNAVDSMN YQQATPIQEQ AIPHILSGKD LLACAQTGTG KTAAYLIPIL 
DKVAHEANEH TGALILVPTR ELAVQIDQQI QGLGYFVGAT SIAVYGGNKG PEWDQQKKAL
TQGADIIIAT PGRLIAHLQL GYVHFRDLRH LVLDEADRML DMGFLGDILK IMSYLPNERQ
TLMFSATMPP KIGDLAKRIL KEPEEIRLAV SRPADRIDQQ FYLAKDEQKL PLLMHLLKGV
ENISMVLFTS RKSNVEPIVR ALRKLGLGAH GISSDSEQGE REIVLRDFKN RQFPILVATD
VLSRGIDIDN LSHVVNYDVP RDPEDYVHRI GRTARAESKG TAMTFINEQD QKYVLKIERL
FEKELEKKSL TAELGLGEAP LFEPPRLRSG GRNKKNRKKP APGAPSGRKP HREARPRQGG
DAGTDSAGVA AVSSGTPAAG SPIAASAAGG TPRGDGAQRK RRNKRRRPKK DQSQTVNPTE
A