Gene GM21_3881 details

Gene Information

• Locus tag: GM21_3881
• Symbol: ispF
• ID: 8139255
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sp. M21
• Kingdom: Bacteria
• Replicon accession: NC_012918
• Strand: +
• Start bp: 4467364
• End bp: 4467852
• Gene Length: 489 bp
• Protein Length: 162 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644871498
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_003023656
• Protein GI: 253702467
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 81
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGTCAGA TGCGTATCGG GCACGGTTAC GACGTTCACA GGCTGGTGGA AGGGCGCAAG 
CTGATCCTCG GAGGGGTCGA CGTCCCCTAC GCCAAGGGGC TCCTCGGGCA CTCCGACGCG 
GACGTCCTTT TGCACGCCAT CTCCGACGCC ATCCTGGGAG CCATCGGCGA GGGGGACATC 
GGCCGCCACT TCCCGGACAC CGATCCCGCC TACAAGGGGG CCGACAGTAT CAAGCTCCTG 
CAACACGTCA TGGGGCTTGC CGACGCCAAG GGGTACCGCA TCGGCAACGT CGACGCCACC 
GTCGTGGCCC AGCGCCCGAA GCTGGCCCCT TTCATCCAGC AGATGCGGCA GAACATCGCC 
CGGGCACTTG CCACCGACGA CGACCGGGTC AACGTAAAAG CGACCACCAC CGAGGAACTC 
GGTTTCGCCG GCCGCGGCGA GGGGATCGCC GCCTACGGCG TAGCCCTTTT GGAACGGAAG 
GACAGGTAA 

 

Protein sequence

MSQMRIGHGY DVHRLVEGRK LILGGVDVPY AKGLLGHSDA DVLLHAISDA ILGAIGEGDI 
GRHFPDTDPA YKGADSIKLL QHVMGLADAK GYRIGNVDAT VVAQRPKLAP FIQQMRQNIA 
RALATDDDRV NVKATTTEEL GFAGRGEGIA AYGVALLERK DR