Gene GM21_3285 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGM21_3285 
Symbol 
ID8138642 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter sp. M21 
KingdomBacteria 
Replicon accessionNC_012918 
Strand
Start bp3815758 
End bp3817308 
Gene Length1551 bp 
Protein Length516 aa 
Translation table11 
GC content58% 
IMG OID644870894 
Productputative PAS/PAC sensor protein 
Protein accessionYP_003023069 
Protein GI253701880 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones115 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCAGC GATTGCGCAT ACTGCATCTA GAGGACGATC CGATGGATGC CGAACTCGTC 
TTGATGGCTC TTACCGCAGA GGGACTCGAT TGTGAGGTCC AGGTGGTGTC GAGGCGGGAT
GAGTTCGACA AGGCGTTGCA GCGCGGGGGA ATGGACCTCA TTCTTGCCGA CTTTGCGCTC
CCTGCCTTTG ATGGGATGAG CGCCTTGGCC ATGGTCCGGG CCAAGCTTCC TGATCTTCCA
TTCGTCTTTG TCTCGGGCAA GCTTGGTGAA GAGGCGGCGA TCGAGTCGCT TAAAAGCGGT
GCCACTGACT ACGTGCTCAA AAGCAGGCTG TCCAGGCTGG GGCCGGCGGT ACAAAGGGCG
CTCACTGAGG CGACGGAGCG AGCGAAACAA CGCCAAACTG AAAAGGCGCT GGAGATAGCA
TATGCTGAGA TAGAGAAGCG GGCGGAGGAC TACCGCAACC TCTTCAACAG CATCAGGGAC
GTCATCGTGG TGGCGGATCA CAACCGGACC ATCCTGCATG TCAACCAACC GGCACTCATG
GACACGTTTG GCTACAGTTC CGGCGAGGTG GTAGGAGAAA GCAGCATCAT CCTCTACGCG
AATGAGGATG ACTTTCACAG CACCGGGAAA GAGGTCTTCG ATGTCGAGGG ACCGGTGGAC
GGGAAACTAA TAGAGCTGAA CTTCCGCAGG AAAGGCGGCG AAACTTTCAT CGGCGAACTT
TATGCGATGA AAAGGCTGGA CCGGCACGGC GTGGTAACCG GCAACATCTC GATCTTCAGG
GATATCAGCC AGCGCAAGAA AGCTGAGGCA GATCTCAGGG AGAGTGAACT GCGCCGCTAC
CAACTGCAGT TGGAACTGGT ATATGCCGCG GAAATTCAGG CAAAGCTATT GCCGCGCAGC
TATCCTAATA TCCCAGGTTT CGACGTGAGC GCGAGATGTC TGCCGGCAAA ACAGGTGGGT
GGGGACTTCT ACGACTGGCA GCAGGTAACC CCCACCGTTT TCAACCTCAC TCTCGGTGAC
GTGATGGGCA AGGGGATGGC GGCGGCCATG CTGATGGCGA CAGTCAGGGC CGCGCTCCAT
GCCGTCACGC TTTACAACGC GCCCGCCCAG GCGGTGCACC TGGCGGAAAA GGCGCTCAAC
GAGGATCTGG AGAATTCCGA GAGCTTCGTT ACCCTTTTCC ATGCCCAACT CGACTCAGTT
AAACGTACCC TTTCCTTTGT GGATTGCGGT CACGGCTATG TCTTTGTCAG GAGAGCCAAC
GGTGCGGTGG AGACCCTCTC CCCGAGAGGG CTTCCCCTGG GGGTGCAGGT GGGGGAAGTT
TACCAGGAAG GTAACCTACT GTTCGAAAAG GGGGATGTAT TTGTCCTTTA CAGCGATGGG
CTCATCGACG CCAACCCGCA GCTTGAGTTG ACCCATGAGA TACTTGCCGA GCATATTACG
GGTGAGGAGA GCGCGCTCGA TACGGTGGAT CGCCTTATCG CTCTGACCCG GCAGCCTGAC
CCGCAGCCTG ACGACATAAC CGTTCTGGTG GCGAGGTTTA CGGGCGGGTA A
 
Protein sequence
MTQRLRILHL EDDPMDAELV LMALTAEGLD CEVQVVSRRD EFDKALQRGG MDLILADFAL 
PAFDGMSALA MVRAKLPDLP FVFVSGKLGE EAAIESLKSG ATDYVLKSRL SRLGPAVQRA
LTEATERAKQ RQTEKALEIA YAEIEKRAED YRNLFNSIRD VIVVADHNRT ILHVNQPALM
DTFGYSSGEV VGESSIILYA NEDDFHSTGK EVFDVEGPVD GKLIELNFRR KGGETFIGEL
YAMKRLDRHG VVTGNISIFR DISQRKKAEA DLRESELRRY QLQLELVYAA EIQAKLLPRS
YPNIPGFDVS ARCLPAKQVG GDFYDWQQVT PTVFNLTLGD VMGKGMAAAM LMATVRAALH
AVTLYNAPAQ AVHLAEKALN EDLENSESFV TLFHAQLDSV KRTLSFVDCG HGYVFVRRAN
GAVETLSPRG LPLGVQVGEV YQEGNLLFEK GDVFVLYSDG LIDANPQLEL THEILAEHIT
GEESALDTVD RLIALTRQPD PQPDDITVLV ARFTGG