| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_2948 |
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| Symbol | |
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| ID | 8138291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sp. M21 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012918 |
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| Strand | + |
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| Start bp | 3428292 |
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| End bp | 3430298 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644870546 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_003022735 |
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| Protein GI | 253701546 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 116 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAAA CTGCCGCGGC TCAAAGGATC AAGTGGTTAA GCTCGGAGAT CGAGCGCCAC
AACCGGCTCT ACTACGAACA GGACATGCCG GAGATAACCG ATGCCGAGTA CGATGCGCTC
TTCCGCGAGT TGAAGGAACT TGAGGCCTCC CATCCCGACC TCGCCCTCCC CGATTCCCCG
ACCGGCAGGG TCGGCGGGCG CCCGGTGGCT AAGTTCACCC AGGTGCGCCA CACAACGCCG
ATGCTTTCGC TGGAAAACGC CTTCACGGAT AAGGACATCG TCGACTTCGA CGACCGGGTG
AAGCGCTTTC TGGGGCTTTC AGGGCAAGCG GAGATCGGTT ACGTCTGCGA GCCGAAGATG
GACGGCGTCG CAGTGGAGTT GGTGTACCGT GAAGGGCTCC TCGCCATCGG CTCCACCCGC
GGCGATGGGG TGGTGGGCGA GGAGGTTACC CAGAACCTGA AGACCATCAA GGACATACCG
CTGCGGCTGC AGACGGAGGA GCCTCCGCGG CTCTTGACGG TGCGGGGCGA GGTGTACCTC
CCGCTGGAAC CTTTCAGGAA GTTCAACCAA GAGCGCGAGG AGGCGGGGGA ACCTCCCTTC
GCGAACCCGC GTAATGCGGC GGCAGGGTCC CTGCGCCAGC TCGACTCGAA GATCACCGCG
AAGCGGCCGC TAAGCATCTT CTGCTACGCC CCTGGCGAGG TGGACGGAGT CGCCTTCGAT
TCACAAAGCC ATTTCCTAAG CACCATCCCC ACCTGGCGCA TCCCGGTGAA CCCGCTGACC
AAGCTCGTCT CAGGCGTACA GGGGGTGCTC GACTACTATC ATGAGATGAT GGAAAAGCGC
GACGATCTCC CGTACGAGAT CGACGGCGTG GTGGTGAAGG TGGACCGGTT TTCCCTGCAG
CGCGACCTGG GGGAGAAGAG CCGCTCGCCG CGCTGGGCCA TAGCCTGGAA GTTCCCTCCG
CGCCAGGCGA CCACGGTGGT CAACGACATC GTGCCCCAGG TGGGTCGGAC CGGCGTCATC
ACCCCGGTAG CGCATCTCGA ACCGGTGAAC GTCTCCGGCG TGATGGTGTC CCGCGCGACG
CTGCACAACT GGGAGGAGAT GGAGCGCAAG GACATCCGCC GCGGCGACAC CGTAGTCGTG
GAACGCGCCG GGGACGTCAT TCCAGCCGTG GTGCAGGTGC TGGTCGAGAA AAGGCAGGGG
AGCGAGACGC TGCTCCCGGT GCCGCAGGCG TGTCCTGTGT GCGGCGGCGA AGTGGTCAGG
ATACCGGGCG AGGTCGCCGT GCGCTGCGTC GGCCTCAACT GTCCCGCGCA GGCATTGGAA
CGGGTGAAGC ATTTTGCCGC CCGCCGCGCC ATGGACATAG ATGGGCTGGG CGAGAAGTTC
ATCGAGCAGC TCCTGAACCT GAAGCTGATA CGGAACGTCG CCGACATCTA CCGGCTCACT
GAAGAGGACT TCATGCGGTT CGAGCGCATG GGGAAAAAGC TGGCGGAGAA CCTTCTGAAT
TCCATCGCGG CGAGCAAGGA GCGGGAGCTT TCCCGCCTAA TTTTCGCGCT CGGGATACGG
CATGTGGGGG AGCACACCGC GAAGCTTTTG GCCGGCGCCT TCGGGAGCAT GGAAAATCTC
GCGGCGGCGA GCGAAGAGGA GTTGACCTCC ATCCGCGAAG TCGGGCCGCA GGTGGCGGCG
AGCATCGCGG ATTTCTTCAA GAGCGAAGAG AACCTGGAAG TGCTCAGGGA GTTAAAGGAG
CACGGGGTGA ATCCCAAGGC GGAAGAGAAG CGGGTCGGCG GCAGGTTCAC CGGCAAGACC
TTCGTCTTTA CCGGCGCGCT GGAGAAGTTC ACGCGCGACG AGGCGAAGAA GATGGTGGAG
CTGGAGGGGG GGCATGCGGC CGGTTCCGTG TCCAAGAAGA CCGACTACGT CGTCGCCGGC
GCCGATGCCG GGAGCAAGCT CGAGAAGGCG CAGCAGTTGG GAGTGCGGGT GTTGAGCGAG
GATGATTTTC TGGAGTTGAT GCGGTAG
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| Protein sequence | MDKTAAAQRI KWLSSEIERH NRLYYEQDMP EITDAEYDAL FRELKELEAS HPDLALPDSP
TGRVGGRPVA KFTQVRHTTP MLSLENAFTD KDIVDFDDRV KRFLGLSGQA EIGYVCEPKM
DGVAVELVYR EGLLAIGSTR GDGVVGEEVT QNLKTIKDIP LRLQTEEPPR LLTVRGEVYL
PLEPFRKFNQ EREEAGEPPF ANPRNAAAGS LRQLDSKITA KRPLSIFCYA PGEVDGVAFD
SQSHFLSTIP TWRIPVNPLT KLVSGVQGVL DYYHEMMEKR DDLPYEIDGV VVKVDRFSLQ
RDLGEKSRSP RWAIAWKFPP RQATTVVNDI VPQVGRTGVI TPVAHLEPVN VSGVMVSRAT
LHNWEEMERK DIRRGDTVVV ERAGDVIPAV VQVLVEKRQG SETLLPVPQA CPVCGGEVVR
IPGEVAVRCV GLNCPAQALE RVKHFAARRA MDIDGLGEKF IEQLLNLKLI RNVADIYRLT
EEDFMRFERM GKKLAENLLN SIAASKEREL SRLIFALGIR HVGEHTAKLL AGAFGSMENL
AAASEEELTS IREVGPQVAA SIADFFKSEE NLEVLRELKE HGVNPKAEEK RVGGRFTGKT
FVFTGALEKF TRDEAKKMVE LEGGHAAGSV SKKTDYVVAG ADAGSKLEKA QQLGVRVLSE
DDFLELMR
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