Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GM21_1784 |
Symbol | secD |
ID | 8137115 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sp. M21 |
Kingdom | Bacteria |
Replicon accession | NC_012918 |
Strand | + |
Start bp | 2074610 |
End bp | 2076208 |
Gene Length | 1599 bp |
Protein Length | 532 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644869396 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_003021596 |
Protein GI | 253700407 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 0.00162006 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGGGTT ATACCTGGCG CATCTCTTTG ATTCTCCTCT TTATCATCGC CTCGTTCGTC TACCTGACGC CGACGCTTGT CGACACGCTC CCCTCCTGGT GGAGCGGGCT GCTCCCCAAG GACAAGATCC ACCTGGGTCT GGACCTTCAG GGGGGTACCC ACCTGGTCAT GGGGGTCGAG ACCGAGAAGG CCGTCGAGGG GTCGCTTGAC CTGATCGCCA CCGACCTGGA AGACTCGCTC ACCCAGCAGA ACCTTCGCTA CAAGAACATC CTCCGCGTCG GAAACGACAA GGTGCAGCTC ACCCTGTACG ATCGCGTCAG CGCCGACGCG GCCCAGGCCC TGATCAAGAA GAAGTACCCC GACATGCAGA TCCTCCCCGC GACCGATGAA GGGGGCTTCA TCGGGATGCA GATTCGCATC GACGAGAAAG AGGCCCAGCT GAGGAAGGAC CGCGCCGTGG CCCAGGCCCT TGAGACCATC CGGAACAGGA TCGACCAGTT CGGCGTCTCC GAGCCGGTGA TCCAGCGCGA GGGGCTGACC AACATCGTGG TGCAGCTCCC GGGCATCAAG GATCCCAAGC GCGCCATCGA CCTGATCGGC AAGACCGCCC GCCTGGAATT CAAGCTGGTG GACGAGACCA TCAACGCCGC CACCGCCACA GCTTCCAGCA TCCCGGCAGA CGACGAACTC CTTTACGAGA AAAATACCGA CCCCGCCACC GGTGCGGTCT CCGAGACCCC GATCGTGGTC AAGAAGAAGG CGATCATCAC CGGCGATCTC CTGACCGACG CGCAGATCCG CATCGACTCC CAGTACAACC AGCCCTACGT CGCCATCGAC TTCAACTCGA CCGGCGCGAG GCTCTTCGAC CAGGTGACCG CGGCCAACGT AGGGAAGCGT TTCGCCATCG TGCTCGACAG CAACGTCTAC TCCGCCCCCG TGATCCGCGA GAGGATCTCC GGCGGCAGCG CCCAGATCTC CGGTTCCTTC ACGGAGAAGG AAGCGGCCGA CCTCGCCATC GTCTTGCGCG CCGGTTCGCT CCCCGCCCCG GTAAAGATCC TGCAGAACGT GACGGTAGGA CCTTCCCTGG GCAAGGACTC GATCCGCAAG GGGCTCATGG CCGGTCTCAT CGGCGTTGCC CTGGTGGTGA GCTTCATGGC GATCTACTAC AAGCTTTGCG GCATGGTCGC CAACTTCGGA ATGGTGCTCA ACATCCTCTT TCTGATGGGC GCCCTCTCGG CCCTCGGCGC CACGCTCACG CTCCCCGGCA TCGCCGCTAT CGTCCTTCTG GTCGGTATGT CGGTCGACTC CAACGTTCTC ATCTTCGAGA GGATCAGGGA GGAGCTGAGG CTCGGCAAGA CGCCGCACGC GGCGGTCGAC TCCGGCTACG ACAAGGCGTT TCTCACCATC ATGGACTCGC ACGTGACCGC CCTCATCACC GCGGCGGTGC TCTTCCAGTT CGGCACCGGC CCGGTCAAGG GGTTCGCGGT CTCCCTGAGC CTCGGCATCA TCATCAACCT TTTCACCTCG CTCGTTACCA CGAGGGTCAT CTTTGACGCC TACCTGGAGC GTGCCAACGT GAAGAGACTC AGCATATAG
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Protein sequence | MKGYTWRISL ILLFIIASFV YLTPTLVDTL PSWWSGLLPK DKIHLGLDLQ GGTHLVMGVE TEKAVEGSLD LIATDLEDSL TQQNLRYKNI LRVGNDKVQL TLYDRVSADA AQALIKKKYP DMQILPATDE GGFIGMQIRI DEKEAQLRKD RAVAQALETI RNRIDQFGVS EPVIQREGLT NIVVQLPGIK DPKRAIDLIG KTARLEFKLV DETINAATAT ASSIPADDEL LYEKNTDPAT GAVSETPIVV KKKAIITGDL LTDAQIRIDS QYNQPYVAID FNSTGARLFD QVTAANVGKR FAIVLDSNVY SAPVIRERIS GGSAQISGSF TEKEAADLAI VLRAGSLPAP VKILQNVTVG PSLGKDSIRK GLMAGLIGVA LVVSFMAIYY KLCGMVANFG MVLNILFLMG ALSALGATLT LPGIAAIVLL VGMSVDSNVL IFERIREELR LGKTPHAAVD SGYDKAFLTI MDSHVTALIT AAVLFQFGTG PVKGFAVSLS LGIIINLFTS LVTTRVIFDA YLERANVKRL SI
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