| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_1590 |
|---|
| Symbol | |
|---|
| ID | 8136921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | + |
|---|
| Start bp | 1854802 |
|---|
| End bp | 1856406 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644869203 |
|---|
| Product | extracellular solute-binding protein family 5 |
|---|
| Protein accession | YP_003021403 |
|---|
| Protein GI | 253700214 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 76 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTTT CCCGCTGTCT CCCCCTCCTT CTTGCCCTCC TAGTCCTTGC CGGTTGCGCC
AAGGGTGCGC CTGAGGACGC GGCGCGCGCG CAGGGTGGGG GCGCTTCCCG CGGCAGTTCC
TTTGTCACCG GGAGCATCGG GGAGCCTTCC ACGCTGATAC CGATACTCGC CAGCGATTCC
GCCTCCTTCC AGGTGGCCGG TCTGGTCTAC AACGGGTTGG TGCGTTACGA CAAGAACCTG
AAGCTGGAGG GGGATCTGGC CCAATCGTGG GAGGTTTCTC CCGACGGTTT GGGCATCACC
TTCCACCTGC GTCGCGGCGT CAAGTGGCAC GACGGCCACG ACTTCACCTC CCGTGACGTC
CTCTACACCT ACAAGGTGAC CATAGACCCC AAGACGCCGA CCGCGTATGC GGAGGACTTC
AAGCAGGTGC TGTCCGCACA GGCGGTGGAT ACTTACACCT TCAAGGTGCG CTACGCCAAG
CCCTTCGCGC CGGCGCTGGC CTCGTGGGCG TCCATGTCGG TCCTGCCTGC ACATCTTTTG
GAAGGGAAGG ACATCACCAA GAGCCCGCTC TCCAGAAAGC CGGTCGGCAC CGGTCCCTAC
ATCTTCAAGG AGTGGGTAGC GGGACAGCGG GTGATCCTGG AGGCAAACCC GCATTATTAC
GAGGGTGCGC CGCACCTCTC CCCCTACGTC TATCGCATCA TCCCGGACAA CTCCACCATG
TACATGGAGC TCAAGGCGGG CGGCATCGAC ATGATGGGGC TTTCCGCGGT GCAGTACCAG
CGCCAGACCG GAAGCCGAGA GTTCCTGTCC CGCTTCAACA AGTACCGCTA CCCGGCCTCC
GCCTACACCT ATCTCGGCTA CAACCTCAGG CTCCCGATGT TCCAGGACGT CAGGGTGCGC
CGCGCGCTCA CCTGCGCCAT CAACAAGGAA GAGATCATTC AGGGGGTCCT GCTCGGGATG
GGGCAGGTAG CACACGGCCC CTACAAGCCG GGCACCTGGG CCTGGAAGCC CACGATCGGG
GCGGACCCCG GCTACGACCC GGCCCGCGCC GCTGCACTCT TGAAAGAAGC GGGGTACGTC
ATGGGGCAAG ACGGCATCCT GGTCAAGGAC GGCAAGCCGC TGAGCTTCAC CATCATGACC
AACCAGGGAA ACGACGAGAG GCTCAAATGC GCCCAGATCA TACAAAGGCG CCTGAAGCGG
GTCGGCATCG ACGTGAAGAT CCGCGTCATG GAATGGGCCT CCTTCCTCAC CAACTTCATC
GACAAGGGGA GGTTCGAGGC GGTGCTGCTC GGCTGGACCA TCTCGCAGGA CCCCGACCTG
TACGACGTCT GGCACTCTTC CAAGACCGGT CCCAAGGAGC TCAATTTCGT CGGCTACAAG
AACCCGGAGC TGGACCGCCT GATCGTCGAG GGGCGCGGCA CCTTCGATAT GGCCAAACGG
CGCGAGAGCT ACTACCGGCT TCAGGAGATA CTGGCGCAGG ACCAGCCCTA CACCTTCCTT
TACGTCCCGG ACGCGCTGCC GGTGGTCGCC TCCAGGATCA AGGGGATTGA GCCGGCGCCT
GCGGGGATCA GCTACAACTT GATCAAGTGG TATGTAGAAC AATGA
|
|---|
| Protein sequence | MTFSRCLPLL LALLVLAGCA KGAPEDAARA QGGGASRGSS FVTGSIGEPS TLIPILASDS
ASFQVAGLVY NGLVRYDKNL KLEGDLAQSW EVSPDGLGIT FHLRRGVKWH DGHDFTSRDV
LYTYKVTIDP KTPTAYAEDF KQVLSAQAVD TYTFKVRYAK PFAPALASWA SMSVLPAHLL
EGKDITKSPL SRKPVGTGPY IFKEWVAGQR VILEANPHYY EGAPHLSPYV YRIIPDNSTM
YMELKAGGID MMGLSAVQYQ RQTGSREFLS RFNKYRYPAS AYTYLGYNLR LPMFQDVRVR
RALTCAINKE EIIQGVLLGM GQVAHGPYKP GTWAWKPTIG ADPGYDPARA AALLKEAGYV
MGQDGILVKD GKPLSFTIMT NQGNDERLKC AQIIQRRLKR VGIDVKIRVM EWASFLTNFI
DKGRFEAVLL GWTISQDPDL YDVWHSSKTG PKELNFVGYK NPELDRLIVE GRGTFDMAKR
RESYYRLQEI LAQDQPYTFL YVPDALPVVA SRIKGIEPAP AGISYNLIKW YVEQ
|
|---|
| |