| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_1209 |
|---|
| Symbol | |
|---|
| ID | 8136534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | + |
|---|
| Start bp | 1416439 |
|---|
| End bp | 1416936 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644868823 |
|---|
| Product | type VI secretion system effector, Hcp1 family |
|---|
| Protein accession | YP_003021028 |
|---|
| Protein GI | 253699839 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
|---|
| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 154 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTTG ACGCGTTTCT GAAAATAGAA GGGATACCGG GGGAGAGTAC CGACGACAAG
CACAAGGAAT GGATCGAGAT CCTCTCTTAC AACTTCTCCG TAATGCAACG CCCCTCCGGT
TCGGCGAGCA CCTCCGGCGG CGCCTCCTCC GAAAGGGCGA ACTTCTCGGA TTTCAACATC
GTGAAGGCGC TGGACAAGGC GTCTCCGAAG CTTTTCGAAG CCTGCGCCAC CGGCCGGCAC
ATCCCCACCG TCACGCTGGA ACTGTGCCGG GCAGGGGGAG ACAAGCTGAA GTACATGGAA
TACAAACTGA GCAACGTCAT CATCAGCATG AACCGTCCCG GCGGCACCTC GCACGCCGAC
GATACCCTCC CTCTTGAAGA GATCTCCTTC AACTACGGCA AGATCGAGCT CGCCTACACC
CATCAAAACC GCGCCGACGG TTCGGGCGGC GGCCAGATTG CCGCCGGCTG GAATCTAGAA
AGCAACAAGA AGGTTTGA
|
|---|
| Protein sequence | MAFDAFLKIE GIPGESTDDK HKEWIEILSY NFSVMQRPSG SASTSGGASS ERANFSDFNI
VKALDKASPK LFEACATGRH IPTVTLELCR AGGDKLKYME YKLSNVIISM NRPGGTSHAD
DTLPLEEISF NYGKIELAYT HQNRADGSGG GQIAAGWNLE SNKKV
|
|---|
| |