| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_0883 |
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| Symbol | |
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| ID | 8136204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sp. M21 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012918 |
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| Strand | - |
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| Start bp | 1051445 |
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| End bp | 1053352 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644868499 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_003020708 |
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| Protein GI | 253699519 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.0000000207097 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTACAGAC TGCTAAGCAA GATCAACGGT CCCGCCGACC TGAAAAAGCT TGATGCCGAG
GAACTGACTC CCCTTGCCGA AGAAGTGCGC GCCTTTCTCC TGGAGACGGT GACCAGGACC
GGCGGACACC TGGCCTCCAA CCTGGGAACG GTGGAGCTGA CCATCGCGCT GCACTACTGC
TTCGACTCCC CCAAGGACAA GATCATCTGG GACGTCGGGC ACCAGGCCTA CACCCACAAG
ATCCTGACCG GCCGCCGCGA CAGCTTCCAC ACCCAGCGCT GCTACAAGGG GATCAGCGGC
TTTCCCAAGC GTGCCGAATC CCCCCACGAC GCCTTCGGCG TAGGTCACTC CTCCACCTCC
ATCTCCGCCG GGCTCGGCAT GGCGGTAGCG CAGGGGCTCA AGGAGGACGC TGCCCGCATC
ATCTCCGTCA TCGGCGACGG CTCCCTTACC GGCGGCATGG CCTTCGAGGC GTTGAACCAG
GCGGGTCATC TCAAGAAAAA CCTGATTGTG GTCCTGAACG ACAACGAGAT GTCCATCTCC
AAAAACGTCG GCGCACTCTC CTCCTTCATC TCGCGCAAGA TGACCGGCGG CTACTACAGA
AGCCTTAAGA AGGAGATGGA GGCGCTCATG GCCAACATCC CGGCCATAGG CAGCAACATC
CTGCACTTCG CCAAGAAGGC GGAGAACTCG CTGAAAGGTT TCCTCACCCC CGGTACCCTC
TTCGAGGGTC TCGGCTTCGA GTACGTGGGC CCCATCGCCG GGCACGACCT CCCCACCCTC
CTGGGTGTGC TGGAAAACGT GAAACGGCTC GAAGGTCCGA TCCTTTTGCA CGTGATGACC
AAGAAGGGAA AGGGATACCC GCCCGCCGAG ACCATGCCGG ACAAGTTCCA CGGAGTGGCG
CCCACGAAGC CGGCCAGCGC CTCCCCGACC AAGCGCCCCC CTCCCTCCTA CACCAGCGTC
TTCGGCGAAA CCATGGTGAA GCTGGGCGAG GTGGATCCGA AGATCCTGGC GATCACCGCC
GCCATGCCCG ACGGCACCGG CTTGACGCCG TTCGCCGAGC GTTTCCCGGA CCGTTTCTTC
GACGTGGGGA TAGCCGAGCA GCACGCGCTC ACTTTCGCGG CGGGGCTGGC GGTGGAAGGC
TTCCGCCCGG TCGCCGCCAT CTACTCCACC TTTACCCAGC GCGCTTACGA TCAGGTCTTC
CACGACATCT GCCTGCAGAA GCTTCCGGTC ACCCTCGCGC TCGACCGCGC GGGCCTGGTC
GGCGACGACG GCCCGACGCA TCACGGCAGC TTCGATATTT CATACCTGCG GCACCTCCCC
GAGCTGACCG TGATGGCGCC CAAGGACGAG AACGAACTGC AGCACATGCT GAAGACCGCC
CTTTACTCGG GGCGTCCCAT CTCGCTGCGC TACCCGCGCG GCGCCGGCTT CGGCGTACCG
CTGGACCAGG AGCTGCAGGA GCTTCCCATC GGCAAGGGCG AACTCCTTAT CGACGGCGGC
GATCTCACCA TAGTCGCCAT AGGGTCCACC GTCCATCCGG CACTGGAGGC CGCGGCCCAG
CTAAGGCAGA AGGGAATCTT CGCCTCCGTC GTCAACGCGC GCTTCATAAA GCCGATCGAC
TCGGAGCTGA TCCTGGCCCA GGCCAAAAAA ACCGGCTGCC TCGTCACCGT CGAAGAGAAC
GCGCTTTTGG GCGGCTTCGG CAGCGCCGTG CTGGAGCTCA TCTCCGACGC GGGACTGAAC
GCGGTCCGGA TCAAGAGGAT CGGCATTCCC GACCGCTTCA TCGAGCAGGG GACCCAGGCA
CAGTTGAGGG CGGACCTTGG TCTCGACGCC GCCGGCATCG CCGCCACCTG CGAAACATTC
CTCAAAAGGG AGAGCGGAAT GTCTCCGCAG CTTGCCGTGG TCAAATAA
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| Protein sequence | MYRLLSKING PADLKKLDAE ELTPLAEEVR AFLLETVTRT GGHLASNLGT VELTIALHYC
FDSPKDKIIW DVGHQAYTHK ILTGRRDSFH TQRCYKGISG FPKRAESPHD AFGVGHSSTS
ISAGLGMAVA QGLKEDAARI ISVIGDGSLT GGMAFEALNQ AGHLKKNLIV VLNDNEMSIS
KNVGALSSFI SRKMTGGYYR SLKKEMEALM ANIPAIGSNI LHFAKKAENS LKGFLTPGTL
FEGLGFEYVG PIAGHDLPTL LGVLENVKRL EGPILLHVMT KKGKGYPPAE TMPDKFHGVA
PTKPASASPT KRPPPSYTSV FGETMVKLGE VDPKILAITA AMPDGTGLTP FAERFPDRFF
DVGIAEQHAL TFAAGLAVEG FRPVAAIYST FTQRAYDQVF HDICLQKLPV TLALDRAGLV
GDDGPTHHGS FDISYLRHLP ELTVMAPKDE NELQHMLKTA LYSGRPISLR YPRGAGFGVP
LDQELQELPI GKGELLIDGG DLTIVAIGST VHPALEAAAQ LRQKGIFASV VNARFIKPID
SELILAQAKK TGCLVTVEEN ALLGGFGSAV LELISDAGLN AVRIKRIGIP DRFIEQGTQA
QLRADLGLDA AGIAATCETF LKRESGMSPQ LAVVK
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