Gene GM21_0171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGM21_0171 
Symbol 
ID8135474 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter sp. M21 
KingdomBacteria 
Replicon accessionNC_012918 
Strand
Start bp203742 
End bp206231 
Gene Length2490 bp 
Protein Length829 aa 
Translation table11 
GC content64% 
IMG OID644867790 
Productpenicillin-binding protein, 1A family 
Protein accessionYP_003020014 
Protein GI253698825 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG5009] Membrane carboxypeptidase/penicillin-binding protein 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.000000166752 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAAACCT ATAAGGCGCA GCCCCGGCAG CAAAACCGCA GACTGAAGCA GCGATCGGGA 
GGCAGAGTAC TCCTCGCCGC CTTCGCGGCA GTTTCGACCA TCGTTTTTCT CGCCTTCATC
GGCTATTTCT TTTACCTTTT GGGGGCCCTA CCCAAGGTGG ACCGCCTGGC GGACTACCGC
CCCCCCATCC TTTCCCAGGT CTACGGCGCC GACGGCACAC TGGTCGGCGA ATTCTACCTG
GAGCGGCGCA CGGTGGTCCC GGTGGACAAG ATGCCCAAGC GGCTGATCCA GGCCTTCGTC
TCCGCCGAGG ATTCCAATTT CTACCAGCAC AAGGGTATCG ACTACGTCGG CATCGCCAGG
GCCGCCTTCA AGAACCTGAT GTCCATGCGC AAGAAGGAGG GGGCCTCCAC CATCACCCAG
CAGGTCGCCA AGTCGATGCT GCTCACCCCG GAAAAGAAGT TCTCCCGCAA GTTCAAGGAG
GCGATTCTCG CTAAAAGGAT GGAGGAGCGG CTCTCTAAGG ACGAGATTCT CTACATCTAC
CTGAACCAGA TCTACCTCGG AGCGGGCGCC TACGGCGTGC AGCTTGCGGC CGAGACCTAC
TTCGGCAAGG AAGTGGAGAA CCTGAACCTC GCGGAGATGG CGATGCTGGC CGGCCTCCCC
AAGGCCCCCA ACAGCTACTC CCCCATCAAG CACCTGGACC GGGCCAAGGA GCGCCAGGCG
TACGTGCTGG AGCGGATGGT GAAGGAGGGG TACATCACCC AGGCCGAGGC TCAGTACGCC
AAGGCGACCC CTATCGTGAT CCAGCCGCTT AAGAAGGTGA ACGCGGAGCA GTCGGCCTAC
TTCCTCGAGC AGGTGCGGCA GCAACTGGTG CAAAAGTACG GCGAGGAGCG GCTCTACAAG
GACGGCCTCA AGATCTACAC CACCATGAAC GGGGAGATGC AGAAGGCTGC CTACTCCTCG
GTCGTGAACG GCCTGAAGGC GGTGGACAAG CGCCAGGGGT TCAGGGGGGC CGCGAAGTAT
CTCCAGGAAG CGGAGGTGGA ACCTTTCTGC AAGAAGGTCG AGGACGAGAT CGACGACCTC
TCCCTGAAGG AGGGGAGCGT CTACCAGGGG GTGGTGACCG GCGTCGACCC GGCGAAACGG
GAGCTCATCG TGCAGGTGGG GGAGCGAACC GGGACCGTCC CCAGGAAGAA CATGGAATGG
GCCGGGAAGC TGGGGCTGAT CCCCAGGTTC GGAAAGCCTG AGGCGAAGCG TGCCATCGGG
CTTGGCGCCG TGCTGGAGCT GCAGGTGAAG GTGCCGGATC AGAACAGGAC CGGAGCGGTG
TTCGCGCTGG ACCAGGTCCC TGAGGCGCAG GCGGCGCTGA TAGCTCTCGA TCCGTTGACC
GGGGGGGTGC GCGCCATGGT CGGGGGGTAC GACTTCAAAA AGAGCCAGTT CAACCGCGCC
ATGCAGGCCA AGCGGAACCC GGGCTCCGCG TTCAAGCCGA TCATTTACGC CACGGCTCTC
GATAACGGCA TGACCACCGC AAGCGTCATC GACGACTCCC AGGTCGAATA CGAAAGCGGT
GCGGAGAAGG CCTGGAAGCC CAAGAACTAC GACAACGTCT ACCGCGGACC GGTCACCATG
CGCGAGGCGC TCACCGAGTC GATCAACGTG GTGAGCGTGA AGATCCTGGA ACAGGTCGGG
GTGGGGACCG CCATCGAATA CGCCAAGAAG ATCGGGATCA CCTCCCCCTT GGCCGGCAAC
CTGACGCTCG CCCTCGGTTC CTCCTCGGTG ACCCCTATCG AGCTCACCAG CGCCTATGCC
GTGTTCGCCT CCGGCGGTTA CCGGACCACC CCCTACTTCG TCACCAAGGT GCTCGACCGC
GAGGGGAACG TGCTCGAGGA AACGGCGGAG CCGAAGATCC CCGTTTTCAG CCGCATGTCG
TCTGCCGGCG AAGTGGACGA GAACACGGCG CCAGGCGAGG ATGGAGACGG GGAAGAAGCG
GCACCCAAGC CGGCCGAAGC CGTCTTGAAT TCGGCCACGG GGGGGGCCTT CCCGGTGATC
CCGCCTGAGA CCGCCTTCAT CATGACAGAC CTGATGCAGA GCGTCGTCAC CAGCGGCACC
GGCGGCAGGG CGCGCGCCGT GGGGAGACCG GTAGCCGGCA AGACCGGAAC CACCAACGAC
ATGAAGGATG CCTGGTTCGT GGGATACGTG CCGCAACTGG TGGCGGGGGT GTGGGTAGGA
TACGACCAGG AGCGGAGCCT TGGAGCCGGA GGGTCGGGGG GCCAGGCGGC AGCGCCGATC
TGGACCGAGT TCATGCAGCG TGCCCTCGCC GGCCTTCCGG TGAAGTCGTT CCCCACCCCG
GGGAACGTCA CCTTCGCCCT CATCGACCCC CGCACAGGGT ATCTGGCACG CGAGGGGAGC
CCCGGCGCTG TGCAGGAATG CTTCATCGCC GGGACGGAGC CGACCAGCTA CGGCGCGGAG
CCGCAGGCGG ACGCAGACAC CGCGCCCTAA
 
Protein sequence
METYKAQPRQ QNRRLKQRSG GRVLLAAFAA VSTIVFLAFI GYFFYLLGAL PKVDRLADYR 
PPILSQVYGA DGTLVGEFYL ERRTVVPVDK MPKRLIQAFV SAEDSNFYQH KGIDYVGIAR
AAFKNLMSMR KKEGASTITQ QVAKSMLLTP EKKFSRKFKE AILAKRMEER LSKDEILYIY
LNQIYLGAGA YGVQLAAETY FGKEVENLNL AEMAMLAGLP KAPNSYSPIK HLDRAKERQA
YVLERMVKEG YITQAEAQYA KATPIVIQPL KKVNAEQSAY FLEQVRQQLV QKYGEERLYK
DGLKIYTTMN GEMQKAAYSS VVNGLKAVDK RQGFRGAAKY LQEAEVEPFC KKVEDEIDDL
SLKEGSVYQG VVTGVDPAKR ELIVQVGERT GTVPRKNMEW AGKLGLIPRF GKPEAKRAIG
LGAVLELQVK VPDQNRTGAV FALDQVPEAQ AALIALDPLT GGVRAMVGGY DFKKSQFNRA
MQAKRNPGSA FKPIIYATAL DNGMTTASVI DDSQVEYESG AEKAWKPKNY DNVYRGPVTM
REALTESINV VSVKILEQVG VGTAIEYAKK IGITSPLAGN LTLALGSSSV TPIELTSAYA
VFASGGYRTT PYFVTKVLDR EGNVLEETAE PKIPVFSRMS SAGEVDENTA PGEDGDGEEA
APKPAEAVLN SATGGAFPVI PPETAFIMTD LMQSVVTSGT GGRARAVGRP VAGKTGTTND
MKDAWFVGYV PQLVAGVWVG YDQERSLGAG GSGGQAAAPI WTEFMQRALA GLPVKSFPTP
GNVTFALIDP RTGYLAREGS PGAVQECFIA GTEPTSYGAE PQADADTAP