| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_0109 |
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| Symbol | |
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| ID | 8135412 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sp. M21 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012918 |
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| Strand | - |
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| Start bp | 132915 |
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| End bp | 135533 |
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| Gene Length | 2619 bp |
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| Protein Length | 872 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644867729 |
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| Product | DNA ligase D |
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| Protein accession | YP_003019953 |
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| Protein GI | 253698764 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 0.0363186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTCTGG AAGAGTATCA GCGCAAAAGG AATCCGGAGA GGACGCCGGA GCCGCCGGCC
GGCGAGGGGA AGTCGGATAG ATCTTTGCGG TTCGTGGTGC ACATGCACGC GGCCTCCCAT
CTGCATTACG ACTTCAGGCT GGAGCTCGAT GGCGTTCTGA AGAGCTGGGC CATCCCCAAG
GGACCCTCGC TGGACCCATC GGTGAAAAGG CTCGCCATGA TGGTGGAGGA CCATCCCTAC
GACTACGGCG ACTTCGAGGG GGTCATCCCC AAGGGGAATT ACGGGGCAGG CGAGGTGATC
GTCTGGGACG CTGGAAGCTA TGAAGCGCCG GGAGCAGCCG ATCTGGAGCA GAACATGCGG
CTGCTGCGCG AGGGTCTGAA GAAGGGAGAC CTGAAGTTCG TGCTCTCCGG CCGGAAACTG
AACGGGGAAT ACGCCCTGGT GCGCATCAAG GGGGACAAGG AGAACACCTG GCTTTTGATC
AAGAAAAACG ACCGGTATGC CTCGGCCGAG GACGTGACGC TGCAGGACCG TTCCGTGGTC
AGTGGGGTCA CCATCGAGGA GGTGAGGGCG GGGAGGAAGC CGCAGGCGCC AGCGGCAACC
GCGGAGGCCG CGGAACCTGT CGGACCTGTC GGACCTGTCG GACCTGCCGC TCCGATGCCG
CACCGCCTTA CACCGATGCT GGCCCGCTCC GCGGCCGAGC CCTTCGACGA TCCGGACTGG
CTCTTCGAGA TAAAACTCGA CGGTTACCGC GCCATCGCCG AGATTGAGGA CGGCGAGGCC
CTCCTTTATT CGCGCAACAA CCTCTCCTTC AACAAACGCT TCCCCGCAAT CGTCCAGTCA
CTGGCTTCCC TGCCGGTCAC GGCAGTGCTG GACGGCGAGG TGGTGGCCCT CGACGAAAAG
GGACGCTCTT ACTTCCAGCT CTTGCAGAAC AACCGGCGCA CCGGAGAGGG GAACATCTAC
TACTACGCCT TCGACCTCCT CTACGTCGAC GGCGAGGACC TGCGCGCCGA ACCGCTTGAG
GCACGCAAGG AGAGACTTCG CTCCCTGCTC CCCGAACTTC CCTGGGTCCG CTTCGGCGAC
CATATCAGGG AGTACGGCAG GCAGTTCTTC GAGCTCGCCC GTGAGAACAA CCTGGAGGGG
ATCCTCGCCA AAAGGGCGGA CAGCCGGTAT TTAGCGGGGA GAAGAAGCGG CGACTGGCTG
AAGATAAAGA TACGGCTGCA GCAGGAGGCG GTCATCTGCG GATTCACCCA GCCCAGGGGG
AGCAGGAAAG GATTGGGCTC CCTGGTGCTG GGGGTCTACG AAAACGACGA GTTGGTTTAC
ATCGGGCTTA CCGGAGGGGG GTTCGACGAC GCGGGATTGA AGGAGATGTA CGCCGCTTTG
CAGCTGCTCG TTCAGCCGGA GTCCCCTTTC CGGCAGCAGG TGAAGACCAG CATGCCGGCC
ACCTGGGTCA AGCCGGTGCT GGTCTGCGAG GTCGAATTCG CCGAATGGAC CGACGAGAAC
GTCATGCGCC AGCCTATCTT CCTGGGGCTT CGGGAGGACA AGGACCCCCG GTCCGTGCAG
CGTGAGATCT TTCCCGCCGA GGTCCAGCCC CCTGTCCACC GTGCGCGGAC GGATCATGAG
GAGGATGCTG ATGAGCCGGC GGCAGGGGAA AAGGTGCCTG CAGAGGAGAC GGTTGCCACG
GCCAATCCTT CCGGCAATAA AGGCTCGAAG AAAGGGGAGG TGAACCTCGT CATCGACGGA
CAGCGGCTCA CCCTCACCAA CCTGGACAAG GTCTTCTGGC CGGAGGAGGG ATACACCAAG
GGGGACGTCA TCGACTACTA CCGTAAGATG GCGCGGGTGA TACTCCCCTA CCTCGTGGAC
CGCCCGGAGT CGATGTACCG CACCCCGCAC GGCATCACGG AAGGAGGGTT CTACCAGAAG
GAGACGGGCG ACCTGATCCC CCCCTGGATC ACCGCCCGGG AAATCTATTC CAAGCACGTA
GACAAGAACA TCAAGTTCCT GGTCTGCCAG AACGAAGCGA CGCTTATCTA CATGGCCAAC
CTGGGGTGCA TCGAGATCAA CCCCTGGCTG TCGCGGCTGC AGCAGCTCAA TCATCCCGAT
TACCTGGTGA TCGACCTGGA CCCCGAGGAC ATCGCCTTCG AGAAGGTGGT CGAGACCGCG
CTCGCCGTGC ACGAGGTCCT GGAGAGCGCG GGCGCGGTCA GTTTCCCGAA GACCTCCGGC
GCCACCGGCA TCCACATCTA CGTCCCGCTG GGAGCCCGCT ACGACTACGA CACGGCGGGG
GGCTTCGCGA AGCTGGTGGC GACGCTCGCG CACCACAAGG TCCCCGGCTT CACCAGCCTC
TTGCGCAGCC CGAGGCAGCG CCAGAAAAAG GTGTACCTCG ACTTCCTGCA GAACAAGCCC
GGCCAGACCC TCGCCGCCCC CTACAGCATC CGCCCCCGCC CCGGGGCGAC CGTTTCCACC
CCGCTCAGGT GGGAGGAGGT GAAGCCCGGT CTCGACCCGC GCCAGTTCAC CATCGACACC
ATCGGGAAGC GGCTTGAGCA GGTCGGCGAC CTGTTCCAAG GCGTGCTCGG CCCCGGTATC
GACATGGAAC AGTGCCTGGA GCGACTGCAA AACGGGTAG
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| Protein sequence | MGLEEYQRKR NPERTPEPPA GEGKSDRSLR FVVHMHAASH LHYDFRLELD GVLKSWAIPK
GPSLDPSVKR LAMMVEDHPY DYGDFEGVIP KGNYGAGEVI VWDAGSYEAP GAADLEQNMR
LLREGLKKGD LKFVLSGRKL NGEYALVRIK GDKENTWLLI KKNDRYASAE DVTLQDRSVV
SGVTIEEVRA GRKPQAPAAT AEAAEPVGPV GPVGPAAPMP HRLTPMLARS AAEPFDDPDW
LFEIKLDGYR AIAEIEDGEA LLYSRNNLSF NKRFPAIVQS LASLPVTAVL DGEVVALDEK
GRSYFQLLQN NRRTGEGNIY YYAFDLLYVD GEDLRAEPLE ARKERLRSLL PELPWVRFGD
HIREYGRQFF ELARENNLEG ILAKRADSRY LAGRRSGDWL KIKIRLQQEA VICGFTQPRG
SRKGLGSLVL GVYENDELVY IGLTGGGFDD AGLKEMYAAL QLLVQPESPF RQQVKTSMPA
TWVKPVLVCE VEFAEWTDEN VMRQPIFLGL REDKDPRSVQ REIFPAEVQP PVHRARTDHE
EDADEPAAGE KVPAEETVAT ANPSGNKGSK KGEVNLVIDG QRLTLTNLDK VFWPEEGYTK
GDVIDYYRKM ARVILPYLVD RPESMYRTPH GITEGGFYQK ETGDLIPPWI TAREIYSKHV
DKNIKFLVCQ NEATLIYMAN LGCIEINPWL SRLQQLNHPD YLVIDLDPED IAFEKVVETA
LAVHEVLESA GAVSFPKTSG ATGIHIYVPL GARYDYDTAG GFAKLVATLA HHKVPGFTSL
LRSPRQRQKK VYLDFLQNKP GQTLAAPYSI RPRPGATVST PLRWEEVKPG LDPRQFTIDT
IGKRLEQVGD LFQGVLGPGI DMEQCLERLQ NG
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