Gene GM21_0094 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGM21_0094 
Symbol 
ID8135397 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter sp. M21 
KingdomBacteria 
Replicon accessionNC_012918 
Strand
Start bp116038 
End bp118203 
Gene Length2166 bp 
Protein Length721 aa 
Translation table11 
GC content63% 
IMG OID644867714 
Productdiguanylate cyclase/phosphodiesterase with extracellular sensor 
Protein accessionYP_003019938 
Protein GI253698749 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value3.75041e-07 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTCCGT TGCGCCTTAG TTTCGTGAGG AACCTGCCGC TTAAGCGCAA GCTGATGCTG 
ATCATCATGC TCTGCTGCTG CGCCTCCCTG CTGGCGGCGT CCATATTCTT TCTCACCAGG
GATGCCAAGG GGGTGTACCG GGTGCAGCGG GAAGACCTGG TCTCGCTGGC GGAGATCATC
GGAGCCAACT CCGCCTCGGC CCTGGTCTTC GACGACCCGG AGTCCGCGCA GCGGACCATC
GCCCCGCTGG CGAGCAAACG CTCCATCCTG GCCGTTTACG TGTTGACCAG CGAAGGGCAG
ATCATGGCGC GCCATGTGGC GCCGGAGGCG GGAAACGCGG AGCTCCCGCT GGAGCGCCTG
GGTGCCTCCC CATCGCCGGC TGCCGTGCTC GCGGCCGTGG AGACCATCAG GAAAACGGCC
GAAAAGAAGA GCGCCGTCCC CGGTTTCGAC TGTCTGGTGC AGCCGGTCTA CTTCGACTAC
GAGCGGGTAG GCACCGTCGT CATCCATGCC GACACCGAGC TGTTTCGGAA AAACCTGCGC
TGGACCGCGA CGGTTACCCT GCTTTTCATG CTGGTAACCG TCATCGCGGC CTATTTCTTC
TCGGCCAAGC TGCAACAGAT GATCTCCAGG CCGCTACTGG ATCTTCTCTC CTCCATGAAG
GACGTCTCAG CCAGCAAGAA CTACGCGATC CGGGTCGCGA AGCCCTCGGA CGACGAGATA
GGTCTTCTCT ACGACGGCTT CAACGAGATG CTCTCCGAGA TCGAGGAGCG CAACCAGATC
CTCAGGCAGC GCCAGGCGCA CCTGCAGCAA CTGGCGCACT ACGATCCGCT GACCCGGCTC
CCCAACCGCA CCCTGTTCTA CGACCGGCTG GCCCAGGCGC TGAACCAGGC CGAGCGGAAC
AGGCAGGCCT TGAGCGTGAT CTTCATCGAC CTGGACCACT TCAAGGACAT CAATGACACC
CTCGGGCACC GCACCGGCGA CCTGTTGCTG ATCGACGTGG CCAACCGGCT TTCCACCGTG
GTGCGCAGTT GCGACACGGT GGCGCGGCTC GGGGGGGACG AGTTCACCGT CTTCACCCAG
AACGTGATGA ACGCCGACAA CGCGGCCATC GTGGCGGCGA AGCTGAACGC GCTCTTCGCC
AAGCCTTTCC AGTTGGGCGA AAGCGAGATC TACGTCACGG CCAGCATCGG GGTGACCCTG
TTCCCCAACG ACGGCAAGAC GGTCGACGAA CTCCTGATGA ACGCGGACAT CGCCATGTAC
CACGCGAAAG CCTGCGGCAA GAACGTCTAC AAGATGTTCG ACAGGAAGAT GAACGAGCAC
GCCAACGAGA GGGTGACGCT GCTGTCGGAC CTGAGGCTTG CGCTGGAGCG CGAAGAGTTC
GTGCTGCACT ACCAGCCCAA GGTGGACCTC CTCACCGGAA ACGTGACTTC GGTGGAGGCC
CTGGTGCGCT GGATGCACCC GAGGCTGGGG ATGCTGGCGC CGGACAAGTT CATCCGGCTG
AGCGAGGAGA GCGGGTTCAT CGTGGAATTG ACCGACTGGG TGCTGCGCAC CGCCTGCACC
CAGGCCAAGA AGTGGCAGGA GCAAAATCTC GGCTCGGTGC GGGTGGCGGT CAACCTCTCG
CCGTACCATT TCCAGCGCCA GGACGTGAAG GAAGCGATCT TCTCCGTGCT GGACGCGACG
GGCCTCGAGC CGGCGCTCCT CGAGATAGAG ATCACCGAAT CGGCGCTGAT GCAAAACGAC
GAGTACACCT GCGCCCTGTT CAGGGAGCTG AGGGAGCTGG GGATGACCAT CTCGGTGGAC
GATTTCGGGA CCGGCTATTC CTCCCTAAGC TATCTGCACC GGTTCCCCAT CAACACGCTG
AAGATCGACC GGACCTTCAT CCTGAACATG ATGAAGAGCT CCGAGGACCA GGCCATCGTC
ACCGCCATCA TCGCCATGGC GAAGAGCCTC AACATGCAGA TCGTCGCGGA GGGGGTGGAG
ACGGTGGACC AGTTGGAGAA GCTCAAGGAT CAGGGTTGCC ACGAGATCCA GGGGTTCCTG
GTGTCGCGCC CGGTGGCCGC GGAATCGGTC ACCCAGTTCT TCACGCCGGA AAACCACCTG
CACCAGCACA CCGCCCCGGC GCAGTCGGAG CCTCCTCAAG GGGGAGCGCC GGCAACACGC
CCTTAG
 
Protein sequence
MSPLRLSFVR NLPLKRKLML IIMLCCCASL LAASIFFLTR DAKGVYRVQR EDLVSLAEII 
GANSASALVF DDPESAQRTI APLASKRSIL AVYVLTSEGQ IMARHVAPEA GNAELPLERL
GASPSPAAVL AAVETIRKTA EKKSAVPGFD CLVQPVYFDY ERVGTVVIHA DTELFRKNLR
WTATVTLLFM LVTVIAAYFF SAKLQQMISR PLLDLLSSMK DVSASKNYAI RVAKPSDDEI
GLLYDGFNEM LSEIEERNQI LRQRQAHLQQ LAHYDPLTRL PNRTLFYDRL AQALNQAERN
RQALSVIFID LDHFKDINDT LGHRTGDLLL IDVANRLSTV VRSCDTVARL GGDEFTVFTQ
NVMNADNAAI VAAKLNALFA KPFQLGESEI YVTASIGVTL FPNDGKTVDE LLMNADIAMY
HAKACGKNVY KMFDRKMNEH ANERVTLLSD LRLALEREEF VLHYQPKVDL LTGNVTSVEA
LVRWMHPRLG MLAPDKFIRL SEESGFIVEL TDWVLRTACT QAKKWQEQNL GSVRVAVNLS
PYHFQRQDVK EAIFSVLDAT GLEPALLEIE ITESALMQND EYTCALFREL RELGMTISVD
DFGTGYSSLS YLHRFPINTL KIDRTFILNM MKSSEDQAIV TAIIAMAKSL NMQIVAEGVE
TVDQLEKLKD QGCHEIQGFL VSRPVAAESV TQFFTPENHL HQHTAPAQSE PPQGGAPATR
P