Gene GM21_0088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGM21_0088 
Symbol 
ID8135387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter sp. M21 
KingdomBacteria 
Replicon accessionNC_012918 
Strand
Start bp111478 
End bp112032 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content61% 
IMG OID644867705 
Product2'-5' RNA ligase 
Protein accessionYP_003019933 
Protein GI253698744 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value3.85137e-13 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGCCAAGAC TCTTCGTCGC CATCGATCTG CCGGAAGAAA TAAAAGCCTC TCTCTCACAG 
CTTTCCTGTG CTGTGCCAGG TGCCCGATGG GTTGACCCTT CCCAAATCCA TCTCACCTTA
CGCTTCATAG GAGACGTCGA CCCTCAGACA GTTTCCAGAA TAAAGAAGGT CCTGTCAGTT
GTGCAGTTCG CCCCTTTTCC CCTCAGCGTA GCCGGGGTCG GCCACTTCCC CCCGCGCGGG
TTCCCCCGCG TCCTTTGGGT CGGGGTGGAA CCGCGCCCCG AACTCATGGC CCTGCAGCAG
CGGATCGAAT CGGCGCTGCA ACGGGCAGGG GTTTCTCCGG AAGAGCGCCC CTTCTCCCCG
CACATAACGC TCGCCCGCCT GAAAGAGACC CCCCCCGCCG CGGTCGCCGC CTTAGAGTCG
TCGCACCGAG GACTCGCCTA CCCACCTTTC CCCGCCACGC AGTACGTACT CTACTCCAGC
GTCCTCACGC CCAAAGGCGC CATCCACCGC AAGGAAGAGA TCTTTCGCTT GAGCGAAGAA
GCGCCTTTAC GCTAA
 
Protein sequence
MPRLFVAIDL PEEIKASLSQ LSCAVPGARW VDPSQIHLTL RFIGDVDPQT VSRIKKVLSV 
VQFAPFPLSV AGVGHFPPRG FPRVLWVGVE PRPELMALQQ RIESALQRAG VSPEERPFSP
HITLARLKET PPAAVAALES SHRGLAYPPF PATQYVLYSS VLTPKGAIHR KEEIFRLSEE
APLR