| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_0080 |
|---|
| Symbol | |
|---|
| ID | 8135379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | - |
|---|
| Start bp | 105449 |
|---|
| End bp | 106474 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644867697 |
|---|
| Product | dihydrouridine synthase DuS |
|---|
| Protein accession | YP_003019925 |
|---|
| Protein GI | 253698736 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 4.28082e-22 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCATGG AAAACCCGCG CCACCAAGCC TTTCAGCCGA ATCCCGAAAC AGCTAACCCC
GCGCCCCCGA AGCTCCCCTG GCTTCTCGGG GCGAAACCGC TCATGCTGGC CCCCATGCAG
GGGCTGACCA ACCGCGCGCT CCGCTCGCTT TTTACCAAGT GGGTGCGCCC GGACGTGGTC
TGGACCGAGT TCATGCGGGT GAATCCGGTG TCGGCCAAAA AGCGCCTCAT GCCGGGCGAC
CTGCGCGAGA TCAGCGCCAG CGAGGACGGA ATTCCCCTGG TGGTGCAGCT GATCGGGCAC
GGGCGGGAGG CGCTTGTTTC CGCGGCGCAG GCCGCGCAGG ACGCGGGCGC CAAGCACCTG
AACCTGAACA TGGGATGCCC TTACGGCCGC ATGACCAGCG GGCTTACCGG CGGCGGCATG
CTGAAGAAGC CGGAACTTCT GGAAGAGATC ATCCCGGCGC TGCGCGAGGC GATCCACGGC
TCCTTCTCCA TCAAGCTCCG CGCGGGGTAC GAAGACCCGC GGCAGGTGTT CTCGCTTCTT
CCCCTCTTCG AGCGGTCCGG CGTCGACTTC CTGGTGCTGC ATCCGCGCAC CGTCCGCCAG
GCCTACAACG GCTGGGCCGA TCACGAAGTG ACGGCGGAGG TGGTGCGCAG CACCGGGATC
CCTGTCATCG CCAACGGCGA CATCAGGAGC GCGGCGGGTG GGCTGCACCT TTTAGAGCAG
ACCGGTGCCG CCGGCCTCAT GCTCGGCCGG GGGGGCATCG GCGAGCCCAT GCTCTTCGAG
CGCTTGCGCG GGCGTGCGGC CGCCGAGCCG GATCTCTCCG AAAGAAGAGC CATGCTCCAC
CGTTACCTTA GCGATCTGCT TCCCCTTTAC TGCGCCCTTT TCTGCGGCGA CGCCCAGATC
CTGGGGAAGA TCAAGGGCGT GGTCTCCAAC GTGGAGGATG CGGAACTTGA GCGCGAACTG
AAAAAGCTCA CTAGGTCGAA GACCCTGCAG GCCTTCCGTG CGGCGTTAGA AGAGCTCATC
CCCTAG
|
|---|
| Protein sequence | MTMENPRHQA FQPNPETANP APPKLPWLLG AKPLMLAPMQ GLTNRALRSL FTKWVRPDVV
WTEFMRVNPV SAKKRLMPGD LREISASEDG IPLVVQLIGH GREALVSAAQ AAQDAGAKHL
NLNMGCPYGR MTSGLTGGGM LKKPELLEEI IPALREAIHG SFSIKLRAGY EDPRQVFSLL
PLFERSGVDF LVLHPRTVRQ AYNGWADHEV TAEVVRSTGI PVIANGDIRS AAGGLHLLEQ
TGAAGLMLGR GGIGEPMLFE RLRGRAAAEP DLSERRAMLH RYLSDLLPLY CALFCGDAQI
LGKIKGVVSN VEDAELEREL KKLTRSKTLQ AFRAALEELI P
|
|---|
| |