| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_4286 |
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| Symbol | pgaB |
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| ID | 8135289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 4851508 |
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| End bp | 4853523 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644867608 |
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| Product | outer membrane N-deacetylase |
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| Protein accession | YP_003019836 |
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| Protein GI | 253690646 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATTCA TACGACTACG AAACGTTATG CTGCTGCTGG GGGTGTTAAT GCTCACCGCC
TGCGCACATT CCGTTGACGT GAAATATAGC TCACCCGCAG AACGCCCGGT TTTGGTCAAG
GAACAGCCGT GGAAAGCCAA TCAATATATC GTTATTGCCT ATCACGATGT GGCAGATAAT
GGAGCCGATC AACGTTTCAT GGCGGTACGC ACCAGCGCAC TGAATGAACA CTTTGCCTGG
TTGAGGGAAA ATGGTTACCA CCCGGTATCC GTTGATGACA TTCTGGCTGC GGGCGCAGGG
GGGAAACCGC TACCAGACAG GGCGGTGCTA CTGACATTTG ATGATGGTTA CAGCAGTTTT
TATCATCGCG TTTACCCTCT GCTGAAAGCC TATGATTGGC CGGCAGTACT GGCACCCGTA
GGGCGCTGGC TGGACACACC TGAAGATCAG CCGGTGGATT TTAGTGGTGT TCAAATACCT
CGCAACCATT TTCTGACCTG GCAGCAAGTC GGTGAAATGG CGCAATCTGG CCTGGTAGAA
ATTGGTGCCC ATACCTATGA CTTACATAAA GGGATTCAGG CAAACCCGCA GGGCAACATG
GAACCCGCCG CCGTTACTCG TCAGTATTTT CCTGAGAGCA AGCGATACGA AACGCGAGAT
GAGTATCGTA AACGTTTTGC GCATGATACG AATCTCATTA CTAAAAGGAT CGCTGACGCG
ACGGGGAAAA AGCCTCGGGT TTGGGTTTGG CCTTATGGTG CGGTAGGAGG CGATGCTCTA
AACATCGTTA AGCAACAGGG TTATCAGCTG GCACTCACGC TTAAAAATGG GCCCGCATCA
ACCGACTCAC CCTATAGCGT TCCTCGCATA CTGATTAACA ACAATCCCGA TGTACAGCAG
TTTGCGCTGT TGGTTAGCTA TGTCCGTGAA CCTGAGGTGA TACGGGTTGC GCATATCGAT
CTGGATTATG TTTATGACAC CGATAAAGCG CAGCAGTCTC GTAATGTCGA TGCATTAGTT
CAGCGCATTG CCGACTTGCG TATTAATACC GTCTATCTTC AGGCTTTCTC CGATCCGAAA
GGAGATGGCA ACGTAAAGTC ACTCTACTTC CCTAATCGTT GGATGCCCGT TCGAGAAGAT
TTATTCAATC ATGTGGCCTG GCAGCTAGCA TCGCGAGCGC TTGTTCGCGT TTATGCCTGG
ATGCCGGTAC TGGCCTTTGA TATGGATGAT GAAACGTTGC CGCGCGTTGA GCGGATTGAC
AGCGAGAGCG GCCAGCGAAG TATCAACCGT AGCCAATATA GACGTTTATC GCTATGGGAT
GCGGAAGCCA GAAGACGAAT TAGTGATATC TATGAAGATC TTTCTGCCTA CGCCATGTTC
GAGGGCATCT TATTTCATGA TGATGCCGTG CTGGCAGAGG ATGAAGATGC AAGCCATTCG
GCGATGCAGG CATATCGGAA GGCTGGATTC CCCGACTCGA TTGCCAGCAT TCGTCGTGAC
CCCGAGCTTA ATGCACGCTG GACGCGGTTT AAAAGTAAAG CGCTAACGGA CTTTACGCTC
GACCTGGCGG CCCGTGTGCG TGACATTCGT GGCCCGCAAG TTCGTACCGC ACGTAACATT
TTCGCATTAC CGATTATTGA ACCGGAAAGT GAAGCATGGT TCTCCCAAAA TCTGGATGAC
TTCCTTGCCG CTTATGATTG GGTTGCCCCC ATGGCGATGC CATTGATGGA AAACATCGCG
CCCAAGGACA GCAATGCGTG GTTGCAAAAG ATGGTACAAG AAGTAGCTCG TCGCCCTGGC
GCGCTGAATA AAACGGTTTT TGAACTTCAG GCTCGGGATT GGCGTGTCCC GGAAGAGCCG
TGGTTAGACA CCGAACAATT GGTTAAATGG ATGACCGTGT TGCAACTGAA TGGTGCGCAA
AATTACGGTT ACTATCCGGA TGATTTTCTT AACAATTCAC CTGAATTGGA AAGCATCCGC
CCCATGATTT CACCAGAATG GTATCCACTG CCATGA
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| Protein sequence | MSFIRLRNVM LLLGVLMLTA CAHSVDVKYS SPAERPVLVK EQPWKANQYI VIAYHDVADN
GADQRFMAVR TSALNEHFAW LRENGYHPVS VDDILAAGAG GKPLPDRAVL LTFDDGYSSF
YHRVYPLLKA YDWPAVLAPV GRWLDTPEDQ PVDFSGVQIP RNHFLTWQQV GEMAQSGLVE
IGAHTYDLHK GIQANPQGNM EPAAVTRQYF PESKRYETRD EYRKRFAHDT NLITKRIADA
TGKKPRVWVW PYGAVGGDAL NIVKQQGYQL ALTLKNGPAS TDSPYSVPRI LINNNPDVQQ
FALLVSYVRE PEVIRVAHID LDYVYDTDKA QQSRNVDALV QRIADLRINT VYLQAFSDPK
GDGNVKSLYF PNRWMPVRED LFNHVAWQLA SRALVRVYAW MPVLAFDMDD ETLPRVERID
SESGQRSINR SQYRRLSLWD AEARRRISDI YEDLSAYAMF EGILFHDDAV LAEDEDASHS
AMQAYRKAGF PDSIASIRRD PELNARWTRF KSKALTDFTL DLAARVRDIR GPQVRTARNI
FALPIIEPES EAWFSQNLDD FLAAYDWVAP MAMPLMENIA PKDSNAWLQK MVQEVARRPG
ALNKTVFELQ ARDWRVPEEP WLDTEQLVKW MTVLQLNGAQ NYGYYPDDFL NNSPELESIR
PMISPEWYPL P
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