| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_4236 |
|---|
| Symbol | rbsC |
|---|
| ID | 8135239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4794081 |
|---|
| End bp | 4795049 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644867558 |
|---|
| Product | ribose ABC transporter permease protein |
|---|
| Protein accession | YP_003019786 |
|---|
| Protein GI | 253690596 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000913636 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCTC AATCTATCGC GGCAAAACGC TGGTTCAGCA AAGAGTGGTT ACTGGAGCAG
AAATCGCTGA TCGCGCTCCT GATCCTTATT GCGATTGTTT CCGCCATGAG CCCTAACTTT
TTCACCCTGA ACAACCTGTT CAATATTCTT CAGCAGACGT CAGTGAACGC CATTATGGCT
GTCGGCATGA CGTTGGTGAT TCTGACCTCG GGCATCGATT TGTCAGTGGG GTCGCTGCTG
GCGCTGACCG GTGCGGTAGC GGCTTCTATC GTCGGGCTTG AGGTCAATGC GCTGGTGGCT
GTATTTGGCG CGCTGGCGCT GGGGGCGCTG ATTGGTGCGG GCACAGGCGT CATTGTTTCG
AAAGGTAAAG TGCAGGCATT TATTGCCACG CTGGTCATGA TGCTGTTACT GCGCGGTGTG
ACGATGGTTT ATACCAACGG CAGCCCGATT AATACCGGCT TTTCCGATGT GGCGGATGCT
TTTGGCTGGT TCGGCATCGG CCGTCCGCTG GGGATTCCGA CGCCAATCTG GATCATGGCT
ATCGTGTTCG CAGCGGCCTG GTACATGCTG CACCATACAC GTCTGGGACG CTATATCTAT
GCGCTGGGCG GCAATGAGTC TGCTACCCGT TTGTCCGGTA TCAGCGTTGA TAAAATCAAG
ATTATTGTCT ATTCCCTGTG TGGGCTGCTG TCTGCTCTGG CGGGAATTAT CGAAGTTGCA
CGTTTGTCCT CTGCACAACC TACGGCGGGG ACAGGCTATG AACTGGATGC CATCGCGGCG
GTGGTATTGG GCGGCACCAG TCTGGCTGGA GGAAAAGGGC GTATCGTTGG CACGCTGATC
GGCGCACTTA TCCTTGGTTT CCTCAACAAC GGACTGAATT TATTAGGTGT TTCTTCTTAC
TACCAAATGA TCGTTAAAGC AGTCGTCATT TTGCTGGCGG TTCTGGTAGA TAACAAAAGC
AGTAAATAA
|
|---|
| Protein sequence | MSSQSIAAKR WFSKEWLLEQ KSLIALLILI AIVSAMSPNF FTLNNLFNIL QQTSVNAIMA
VGMTLVILTS GIDLSVGSLL ALTGAVAASI VGLEVNALVA VFGALALGAL IGAGTGVIVS
KGKVQAFIAT LVMMLLLRGV TMVYTNGSPI NTGFSDVADA FGWFGIGRPL GIPTPIWIMA
IVFAAAWYML HHTRLGRYIY ALGGNESATR LSGISVDKIK IIVYSLCGLL SALAGIIEVA
RLSSAQPTAG TGYELDAIAA VVLGGTSLAG GKGRIVGTLI GALILGFLNN GLNLLGVSSY
YQMIVKAVVI LLAVLVDNKS SK
|
|---|
| |