Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4235 |
Symbol | |
ID | 8135238 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4793168 |
End bp | 4794055 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644867557 |
Product | D-ribose transporter subunit RbsB |
Protein accession | YP_003019785 |
Protein GI | 253690595 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000930744 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATATGA AAAAGCTGGC TACTCTGGTT TCCGCTGTTG CGCTGAGCGC GACTGTCAGT GCTAATGCCT TGGCCAAAGA TACGGTTGCT CTGGTGGTTT CTACGCTGAA TAACCCGTTC TTTGTTTCAA TGAAAGAGGG TGCGCAGAAA GAAGCTGACA AACTGGGTTA CGAGCTGATC GTGCTGGATT CCCAGAATAA CCCAGCGAAA GAACTGGCTA ACGTTCAGGA TTTGACGGTA CGTGGAACCA AAGTTCTGCT GATCAACCCG ACCGATTCTG ATGCGGTCGG TAATGCGATT AAAATGGCAA ACCAGGCCAA GATCCCTGTT ATTACGCTGG ACCGCGTTGC CAGCAGTGGT GAAGTGGTAA GCCACGTTGC TTCTGATAAC GCCTTCGGTG GTAAAGTTGC TGGTGACTTC ATTGCCAAGA AACTGGGTGA AGGCGCTAAA GTTATTCAAC TGGAAGGGAT TGCCGGAACG TCTGCCGCGC GCGAACGCGG TGCGGGCTTC ATGAAATCTG CTGAGAAAAA TAAATTCGTT ATGTTGGCCA GCCAACCGGC TGACTTCGAT CGTACTAAAG GGCTGAACGT GATGCAGAAC CTGCTGACCG CGCACCCTGA CGTTCAGGCG GTATTTGCTC AGAACGATGA AATGGCGTTG GGCGCACTGC GTGCGCTGCA AACTGCAGGC AAGACTGATG TGCTGGTCGT CGGTTTTGAC GGTACGCAGG ATGGCGTGAA GGCTGTTGAA TCAGGCAAGC TGGCGGCAAC GGTTGCTCAG CGTCCCGATC AGATCGGTGT GATCGGCATC GAGACGGCGG CGAAGGTGCT GAAAGGCGAA AAAACGCAGG CCATCATTCC GGTTGACCTG AAGCTGGTAG CAAAATAA
|
Protein sequence | MNMKKLATLV SAVALSATVS ANALAKDTVA LVVSTLNNPF FVSMKEGAQK EADKLGYELI VLDSQNNPAK ELANVQDLTV RGTKVLLINP TDSDAVGNAI KMANQAKIPV ITLDRVASSG EVVSHVASDN AFGGKVAGDF IAKKLGEGAK VIQLEGIAGT SAARERGAGF MKSAEKNKFV MLASQPADFD RTKGLNVMQN LLTAHPDVQA VFAQNDEMAL GALRALQTAG KTDVLVVGFD GTQDGVKAVE SGKLAATVAQ RPDQIGVIGI ETAAKVLKGE KTQAIIPVDL KLVAK
|
| |