Gene PC1_4219 details

Gene Information

• Locus tag: PC1_4219
• ID: 8135218
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: -
• Start bp: 4768830
• End bp: 4770653
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 644867537
• Product: GTP-binding protein TypA
• Protein accession: YP_003019769
• Protein GI: 253690579
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATCGAAA ATTTGCGTAA CATCGCCATT ATTGCGCACG TTGACCATGG GAAAACCACC 
CTGGTCGACA AGCTGTTGCA ACAATCCGGA ACGTTCGGTG AACGTGTCGA AGCAACCGAG 
CGTGTAATGG ACTCCAACGA TTTGGAGAAA GAGCGTGGAA TTACCATCCT CGCAAAAAAT 
ACCGCCATTA ATTGGAAAGA CTACCGCATT AACATCGTAG ATACCCCGGG ACACGCCGAC 
TTCGGCGGCG AGGTTGAGCG TGTAATGTCG ATGGTTGACT CGGTACTGCT GGTTGTTGAT 
GCGATGGATG GCCCGATGCC GCAAACGCGT TTCGTGACCA AAAAAGCATT TGCCAACGGT 
CTGAAGCCGA TTGTGGTTAT CAACAAAGTT GACCGTCCTG GCGCGCGTCC TGACTGGGTT 
GTCGATCAGG TATTCGACCT GTTCGTGAAC CTGGATGCGA CTGACGAACA GCTGGATTTC 
CCGATCATTT ATGCTTCTGC GCTGAATGGT ATCGCGGGTC TTGACCATAC CGACATGGCG 
GAAGATATGA CCCCGCTGTA TCAGGCGATT GTCGATCACG TGTCTCCGCC TCAGGTTGAG 
ATGAATGCAC CGTTCCAGAT GCAGATCTCT CAGCTGGACT ACAACAACTA TGTTGGCGTT 
ATCGGTATCG GCCGTATCAA GCGCGGTAAA GTGAAGCCTA ACCAACAAGT GACTATTGTT 
GATAGCGAAG GCAAAACCCG TAACGGTAAA GTCGGTAAAG TTCTGACTCA CCTGGGTCTG 
GAGCGTATTG ACGCAACCGA AGCGGAAGCA GGCGATATCA TCGCGATCAC CGGTCTGGGC 
GAGCTGAACA TTTCCGACAC CATCTGCGAT CCGCAGAATG TCGAAGCGCT GCCAGCACTG 
AGCGTCGATG AACCTACCGT TACCATGTTC TTCAACGTCA ACACTTCACC GTTCTGTGGT 
AAAGAAGGTA AGTATGTTAC GTCGCGCCAG ATTCTGGAGC GTCTGAACAA AGAGCTGGTG 
CACAACGTTG CCCTGCGCGT TGACGAAACC GAAGATGCCG ATGCGTTCCG CGTTTCTGGC 
CGTGGTGAAT TGCACCTGTC GGTTCTGATC GAAAACATGC GTCGTGAAGG CTTTGAACTG 
GCCGTGTCAC GTCCGAAAGT TATTAACCGC GTTATCGACG GCCGTAACCA AGAGCCGTTT 
GAAAACGTGA CGCTGGACAT CGAAGAACAG CACCAGGGTT CAGTCATGCA AGCCATGGGT 
GAGCGTAAAG GTGATGTGAA AGACATGATT CCAGATGGCA AAGGTCGTAT CCGTCTGGAT 
TACCTGATCC CAGCTCGCGG TCTGATCGGT TTCCGTACCG AATTCATGAC CATGACGTCT 
GGTACAGGCC TGCTGTACTC CACGTTCAGC CACTACGATG ATGTGCGTCC GGGTGAAATC 
GGCCAGCGTC AGAACGGCGT ACTGATCTCT AACGGTCAGG GTAAAGCCGT CGCGTTTGCG 
CTGTTCAGCC TGCAGGATCG CGGTAAGCTG TTCCTCGGAC ACGGTGCAGA AGTGTATGAA 
GGCCAAATCA TTGGTATTCA CTCACGTTCT AACGATCTGA CAGTAAACTG TCTGACCGGT 
AAGAAACTGA CCAACATGCG TGCATCAGGT ACTGACGAAG CAACCACGCT GGTTCCGGCG 
ATCAAAATGT CTCTGGAACA AGCGCTGGAG TTTATTGATG ACGACGAACT GGTTGAAGTT 
ACGCCACAGT CTATCCGTAT TCGTAAACGT CACCTGACCG AAAACGATCG TAAACGCGCT 
AGCCGCGGCA GCAAAGACGT CTAA 

 

Protein sequence

MIENLRNIAI IAHVDHGKTT LVDKLLQQSG TFGERVEATE RVMDSNDLEK ERGITILAKN 
TAINWKDYRI NIVDTPGHAD FGGEVERVMS MVDSVLLVVD AMDGPMPQTR FVTKKAFANG 
LKPIVVINKV DRPGARPDWV VDQVFDLFVN LDATDEQLDF PIIYASALNG IAGLDHTDMA 
EDMTPLYQAI VDHVSPPQVE MNAPFQMQIS QLDYNNYVGV IGIGRIKRGK VKPNQQVTIV 
DSEGKTRNGK VGKVLTHLGL ERIDATEAEA GDIIAITGLG ELNISDTICD PQNVEALPAL 
SVDEPTVTMF FNVNTSPFCG KEGKYVTSRQ ILERLNKELV HNVALRVDET EDADAFRVSG 
RGELHLSVLI ENMRREGFEL AVSRPKVINR VIDGRNQEPF ENVTLDIEEQ HQGSVMQAMG 
ERKGDVKDMI PDGKGRIRLD YLIPARGLIG FRTEFMTMTS GTGLLYSTFS HYDDVRPGEI 
GQRQNGVLIS NGQGKAVAFA LFSLQDRGKL FLGHGAEVYE GQIIGIHSRS NDLTVNCLTG 
KKLTNMRASG TDEATTLVPA IKMSLEQALE FIDDDELVEV TPQSIRIRKR HLTENDRKRA 
SRGSKDV