Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4211 |
Symbol | |
ID | 8135210 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 4758041 |
End bp | 4760140 |
Gene Length | 2100 bp |
Protein Length | 699 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644867529 |
Product | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase |
Protein accession | YP_003019761 |
Protein GI | 253690571 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTACATTT TTGAAAGCCT TAATCTGCTG ATTCAACGTT ATCTGCCAGA AGATCAGATC AAACGTTTAC AGCAGGCTTA CTTAGTTGCA CGTGATGCTC ACGAGGGGCA GACTCGCTCC AGCGGTGAAC CCTATATCAC ACACCCTGTT GCCGTCGCCT GTATTCTGGC GGAGATGCGT CTCGATTACG AAACGCTGAT GGCAGCACTG CTGCATGATG TCATAGAAGA CACCCCCGCC ACCTATCAGG ACATGGAACA GCTTTTTGGT AAAAGCGTTG CTGAACTGGT AGAGGGCGTG TCCAAGCTGG ATAAACTGAA GTTCCGCGAT AAGAAAGAAG CGCAGGCTGA AAACTTTCGC AAAATGATCA TGGCGATGGT GCAGGACATT CGCGTCATCC TGATCAAACT CGCAGACCGT ACCCATAACA TGCGTACACT GGGCTCATTA CGCCCAGACA AACGTCGCCG CATTGCCCGC GAAACACTGG AAATATACAG TCCGCTGGCA CACCGACTGG GTATCCATCA CCTCAAAACC GAGTTGGAAG AACTGGGTTT TGAGGCGCTG TATCCGAACC GTTATCGCGT CATTAAAGAG GTCGTCAAGG CCGCGCGCGG TAACCGCAAG GAAATGATCC AGAAAATCCT GTCGGAAATC GAAGGGCGTT TGACGGAAGC CGGGATTGCC TGCCGCGTCA GCGGCCGCGA AAAACACCTG TACTCCATCT ACTGCAAAAT GCACCTGAAA GAGCAGCGTT TTCATTCCAT CATGGATATC TACGCGTTTC GGGTCATCGT CAAAGAGCTG GACACCTGCT ATCGCGTGCT CGGTCAGGTT CACAGCCTGT ATAAGCCGCG CCCGGGTCGG GTGAAAGACT ATATCGCTAT TCCCAAAGCC AACGGCTATC AATCGCTGCA CACGTCGCTG ATTGGTCCGC ACGGCGTGCC GGTTGAAGTA CAAATTCGCA CCGACGACAT GGATCAAATG GCGGAAATGG GTGTCGCCGC GCACTGGGCT TATAAAGAAG GTGAAAGTAG CACCACCGCA CAGGTACGCG CCCAACGCTG GATGCAAAGC CTGTTGGAAC TTCAGCAAAG TGCCGGTAGC TCATTTGAAT TTATCGAAAG CGTGAAGTCC GATCTCTTCC CTGACGAGAT GTACGTCTTC ACGCCGGAAG GCCGTATTGT GGAACTCCCC GCAGGTGCGA CGCCCGTCGA TTTCGCCTAC GCGGTACACA CCGATATCGG CCATGCGTGC GTCGGCGCAC GCGTTGATCG TCAGCCTTAC CCGCTATCAC AGTCGCTCAC CAGCGGCCAA ACCGTTGAAA TCATCACCGC ACCAGGCGCC AGACCCAACG CCGCATGGCT TAACTTTGTC GTGAGCTCAA GAGCGCGTTC TAAAATCCGC CAGATGCTGA AAAACCTAAA GCGTGATGAT TCCGTGAGCC TCGGCCGCCG TTTACTGAAC CACGCGCTGG GCAATGGCCG TAAACTTTCC GATATCCCTG AGAAATCTAT TCAGCTTGAG CTTGATCGCA TGAAGCTCGC TACGCTGGAC GATCTGATGG CGGAAATTGG TATGGGTAAT GCCATGAGCG TCGTGGTGGC GAAAAATCTG CTGAACGAAC AGTCTGAGCT GGGAACCACC GGGTTGCGCA AGTTGCCGAT CAAAGGCGCA GATGGCGTCA TGATCTCATT TGCCAAATGC TGCCGCCCTA TCCCCGGCGA CCCGATCATC GCCCACGTCA GCCCCGGTAA AGGGCTGGTT ATCCACCATG AATCCTGTCG CAACATTCGC GGCTATCAGA AAGAACCTGA AAAATTCATG GCAGTAGAGT GGGATAAGGT GACGGAACAA GAGTTCATCG CTGAAATCAA AGTCGATATG TTCAACCATC AGGGCGCATT GGCGAACCTG ACGGCAGCGA TCAATGCCGC GAATTCTAAT ATTCAGAGCA TCAACACGGA AGAGAGAGAC GGCCGCGTAT ACAGCGCCTT TATCCGTCTC ACCACCCTCG ATCGCGTTCA TCTGGCCAAT ATTATGCGTA AAATTCGCGT GATGCCGGAT GTCATCAAAG TTAACCGTAA CCGAAATTAA
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Protein sequence | MYIFESLNLL IQRYLPEDQI KRLQQAYLVA RDAHEGQTRS SGEPYITHPV AVACILAEMR LDYETLMAAL LHDVIEDTPA TYQDMEQLFG KSVAELVEGV SKLDKLKFRD KKEAQAENFR KMIMAMVQDI RVILIKLADR THNMRTLGSL RPDKRRRIAR ETLEIYSPLA HRLGIHHLKT ELEELGFEAL YPNRYRVIKE VVKAARGNRK EMIQKILSEI EGRLTEAGIA CRVSGREKHL YSIYCKMHLK EQRFHSIMDI YAFRVIVKEL DTCYRVLGQV HSLYKPRPGR VKDYIAIPKA NGYQSLHTSL IGPHGVPVEV QIRTDDMDQM AEMGVAAHWA YKEGESSTTA QVRAQRWMQS LLELQQSAGS SFEFIESVKS DLFPDEMYVF TPEGRIVELP AGATPVDFAY AVHTDIGHAC VGARVDRQPY PLSQSLTSGQ TVEIITAPGA RPNAAWLNFV VSSRARSKIR QMLKNLKRDD SVSLGRRLLN HALGNGRKLS DIPEKSIQLE LDRMKLATLD DLMAEIGMGN AMSVVVAKNL LNEQSELGTT GLRKLPIKGA DGVMISFAKC CRPIPGDPII AHVSPGKGLV IHHESCRNIR GYQKEPEKFM AVEWDKVTEQ EFIAEIKVDM FNHQGALANL TAAINAANSN IQSINTEERD GRVYSAFIRL TTLDRVHLAN IMRKIRVMPD VIKVNRNRN
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