| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_4206 |
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| Symbol | |
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| ID | 8135204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 4751829 |
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| End bp | 4752377 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644867523 |
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| Product | virulence-related outer membrane protein |
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| Protein accession | YP_003019756 |
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| Protein GI | 253690566 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3637] Opacity protein and related surface antigens |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAAGATG TTTCGATCAT GAAAAAAACA ACGCTGCTGC TTTCCACTTT AATTGCTTGT
GCCATGGGAA TGTCTGTTGC TCAGGCAACA CAAACGGTAT CTTTGGGTTA TGCTCAGGCG
AAAGTCGATG ACTTTAAAGA TCCAAAAGGG ATTACCGCAA AATACCATTA TCAAGGTGAT
TCCGATCTCG GCATTATTGG CTCTTTCACT TACCTAGGGG CAAAAGAAGA TTATTATGAT
CGTGACTTCA ACTCCAATGA TACGACCAAA CTTAAATACT ATTCCTTAAT GGCTGGACCA
TCCTACCGTT TTAACGATGT CGTTAGTGTT TATGGTCTAG CGGGTGTTGG TCATGGAAAA
GCAGATTGGA AATACGATTA CGGCAATTTT GTCGATTCAG GCAGCGAGAA AGAAACCCGC
TTTGCTTACG GTGCCGGTAT TCAAATTACG CCAGTAGCAA ACTGGGCGAT TGATATTGGC
TACGAAGGCA CGAAAATTTA TGAAACGCGT GTCGATGCCT TTAATATTGG CGTCGGCTAT
CGTTTCTGA
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| Protein sequence | MEDVSIMKKT TLLLSTLIAC AMGMSVAQAT QTVSLGYAQA KVDDFKDPKG ITAKYHYQGD
SDLGIIGSFT YLGAKEDYYD RDFNSNDTTK LKYYSLMAGP SYRFNDVVSV YGLAGVGHGK
ADWKYDYGNF VDSGSEKETR FAYGAGIQIT PVANWAIDIG YEGTKIYETR VDAFNIGVGY
RF
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