| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_4205 |
|---|
| Symbol | |
|---|
| ID | 8135203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 4750181 |
|---|
| End bp | 4751788 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644867522 |
|---|
| Product | EAL domain protein |
|---|
| Protein accession | YP_003019755 |
|---|
| Protein GI | 253690565 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4943] Predicted signal transduction protein containing sensor and EAL domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCCCA GACTTAACAA ACATAAAATC AACCTCTTGC AGCTACTGGT TGCTGGCATA
CTGCCGCTGC TGCTTGGGTT GTTGTTCACT TTTGTTGAGT CCAGATTAAT GGTAAAGCGG
GATTTGGAAT CCACTGCGCA AATCGCGATG AATCATGCCG AGAATATTTC GGCACAGGCA
TGGAAGATGG TAGATCGTCT CCAGCGCTTC CATGGTCAGC CCTGCAACAT TATCGGCGAT
GAATTGCAGC GCCTCGGTTC GGTCTTTTCT TACTTTCGTG CCATTGGCGT TATCCATAAT
ACCAATGTCT ATTGCTCTTC AACGTTTGGC AGCACACTGA CGCCAATCAG CCGCGTCATT
CAACAACCGC TGCCAGAGAC GTATTCTGAA CGCTGGAGCC TGTCGATTGC TGGTTCAGAC
AACGTGAAAG AACGGCCGGC GCTGATTTTC GTCCAGATGC CTCTTACGGG TGACGGCGCT
TATGCCATGG TCGATGCGCA ATATCTGATC GACCTCATGA TTGCGATTAG CAAAATACGC
GGCTACCAAC TTACCCTGAA AATGGATAAC GGCCATCCGA TTCAAACTGG CCCGGCGATT
ACGCCCCGCA TCGGCCTATT TTCTACCTCT GCGCTTGAAA TCAGGTCGAG CCGATTCCCG
ATTACGCTCA ATATCACCGC CCCAGCTTCT CAGGAAATAG CGAACTGGAA GCAGGCTTTC
TTCACGTTTC TGCCACTGGC GATTATTCTC TCTCTGCTTT TCACTACAGC GATCTGGTAC
TGGCAAAAAC GTAAATTATT ATTCCGCGAC GAAATCCGCA AAGGCATCGC TAACGGCGAG
TTTTCCGTCT ATTACCAGCC CATCTATGAT GCAGAATCGC AAACCTGCAC CGGCGTTGAG
ACGTTACTGC GCTGGCGACG TAGCAACGGG AAGTGGATCA GACCTGATAT ATTTATCTCT
GCCGCCGAAG CTGAAAGTAT GATTATTCCC ATCACTCGGC ACTTATTTGA TCTGGTGGCA
TCAGATATTG CCAGTTGGCA GGTAAAGCCG GGGTTTCATC TGGGGCTCAA CGTTGCAGCC
GAACACTTGC ATCATCCCAG TTTTGTATCA GACGTACACC GCTTCGCAGA GAAGGTCGCT
TCTCATTCAT TGAGCATTTC TCTGGAACTG ACGGAACGTA ACCTCATCAG CAACGGTCCT
GAAATCATAC AGCGCCTGCA TCAGCTACGT GAAGATGGCT TTATGATTAC CATTGATGAC
TTTGGTACCG GACACTGTTC ACTCTCTTAT CTGCAAAACT TTCCGCTAGA TTGCCTGAAA
ATAGACCAGG GATTCGTTAG CGCAATTTCA TCACCAGATG AAGAAGCGCC AATTCTTGAT
GCCATTATTA ATTTGAGCCA TCGCATCAAT CTTCAATCCG TCGCGGAAGG CGTAGAAACC
AAACAGCAGC TCATGTATTT ACAACAGCAC GGCGTCAAAT ATATACAGGG ATTCCTTTAC
GCTAAGCCGA TGGATAATGA ATCGTTTCTC GTCTGGCTTC ACTACAATGG CAATAAATCG
ATAGAGAGCT TTATGATGAA AAATGAAGAA GGGAAGAAGA ACGACTAA
|
|---|
| Protein sequence | MSPRLNKHKI NLLQLLVAGI LPLLLGLLFT FVESRLMVKR DLESTAQIAM NHAENISAQA
WKMVDRLQRF HGQPCNIIGD ELQRLGSVFS YFRAIGVIHN TNVYCSSTFG STLTPISRVI
QQPLPETYSE RWSLSIAGSD NVKERPALIF VQMPLTGDGA YAMVDAQYLI DLMIAISKIR
GYQLTLKMDN GHPIQTGPAI TPRIGLFSTS ALEIRSSRFP ITLNITAPAS QEIANWKQAF
FTFLPLAIIL SLLFTTAIWY WQKRKLLFRD EIRKGIANGE FSVYYQPIYD AESQTCTGVE
TLLRWRRSNG KWIRPDIFIS AAEAESMIIP ITRHLFDLVA SDIASWQVKP GFHLGLNVAA
EHLHHPSFVS DVHRFAEKVA SHSLSISLEL TERNLISNGP EIIQRLHQLR EDGFMITIDD
FGTGHCSLSY LQNFPLDCLK IDQGFVSAIS SPDEEAPILD AIINLSHRIN LQSVAEGVET
KQQLMYLQQH GVKYIQGFLY AKPMDNESFL VWLHYNGNKS IESFMMKNEE GKKND
|
|---|
| |