Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4180 |
Symbol | |
ID | 8135178 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4719342 |
End bp | 4719965 |
Gene Length | 624 bp |
Protein Length | 207 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644867497 |
Product | Lysine exporter protein (LYSE/YGGA) |
Protein accession | YP_003019730 |
Protein GI | 253690540 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1280] Putative threonine efflux protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACGTTGA CCGAATCGCT GATTGCTTTT ACGTTTGCCG CGACGATATT AACCCTGACG CCGGGTTTGG ATACGGCCTT GATTTTACGC ACCGCGACCG TTGAAGGCAG TAAGAAAGCC TTCCATGCCG CGTTTGGTAT TCAAGTCGGT TGCCTGATTT GGGGCGCGAT GGTGGCATTT GGTCTGGGAA CGCTGATTGC GGCGTCGGAG CTGGCCTATA ACATCCTGAA ATGGTGCGGT GCGGCGTACC TCTGCTGGCT GGGTTTGCAA ATGCTCCTGA AGCCCAGAAC CGAGCTGGTA ATGGCGGCAT CACAAGACGC ACCAAAGCAT CAGAACTGGT TTCTCCGTGG CATGTTGGGT AACGTTCTCA ATCCGAAAAT CGGCGTGTTC TATGTTTCAT TCCTGCCGCA ATTTATCCCT GCCGGCCATT CGGTCGTGTT GTGGACTTAC CTGCTCGTTC TTATTCATGT CGTCATCGGC ACGCTGTGGT CGTCTACGCT GATTGCTGCT ACGCGCCCGC TGTCGCGTTT TCTACGGCGC GGCTCGGTCG TGAAATGGAT GGACCGAACG ACGGGCGTTC TCTTTCTGGC ATTCGCCGCG CGTCTGGCTT TGTCCCGGCG GTAG
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Protein sequence | MTLTESLIAF TFAATILTLT PGLDTALILR TATVEGSKKA FHAAFGIQVG CLIWGAMVAF GLGTLIAASE LAYNILKWCG AAYLCWLGLQ MLLKPRTELV MAASQDAPKH QNWFLRGMLG NVLNPKIGVF YVSFLPQFIP AGHSVVLWTY LLVLIHVVIG TLWSSTLIAA TRPLSRFLRR GSVVKWMDRT TGVLFLAFAA RLALSRR
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