Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4165 |
Symbol | |
ID | 8135163 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4699767 |
End bp | 4701674 |
Gene Length | 1908 bp |
Protein Length | 635 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644867482 |
Product | PTS system, mannitol-specific IIC subunit |
Protein accession | YP_003019715 |
Protein GI | 253690525 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2213] Phosphotransferase system, mannitol-specific IIBC component |
TIGRFAM ID | [TIGR00851] PTS system, mannitol-specific IIC component |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTTCAC CAGATATTAA GATCAAAGTG CAAAACTTTG GTCGCTTCCT CAGCAATATG GTCATGCCCA ATATTGGCGC TTTTATCGCC TGGGGTATTA TTACCGCTCT GTTTATTCCT ACCGGCTGGA TTCCCAATGA AACGTTGGCG AAGCTCGTCG GCCCGATGAT TACGTATTTG CTGCCATTGC TGATTGGTTA TACCGGCGGA CGCCTGGTAT TCGGTGAGCG TGGTGGCGTG GTCGGTGCAA TTACGACGAT GGGTGTGATC GTCGGGACCG ACATCCCGAT GTTCCTCGGC GCGATGATCG TTGGTCCATT GGGCGGCTGG GCGATCAAAC GTTTTGACCG CGTGGTCGAC GGTAAAATCA AGAGCGGCTT TGAAATGCTG GTCAACAACT TCTCTGCCGG TATTATCGGT ATGTTGTTGG CAATTCTGGC ATTTTTGGCA ATCGGTCCAC TGGTTGAAGT GTTCTCTCAG GTGCTGGCTT CCGGCGTTAA CCTGATGGTA CAGAACAACC TGCTGCCGTT TACGTCCATC TTTGTTGAAC CCGCGAAAAT TCTGTTCCTG AATAACGCCA TTAACCACGG TATTTTCTCA CCGCTGGGCA TTCAGCAGGC GACGGAAACG GGCAAATCTA TTTTCTTCCT GATCGAAGCG AACCCAGGCC CAGGTATGGG CGTGCTGATG GCTTATATGT TCTTCGGTCG TGGTAACGCG AAAGAGTCAG CGCCAGGTGC GGCGATTATC CACTTCCTGG GCGGGATTCA CGAAATCTAC TTCCCTTATG TCCTGATGAA TCCGCGTCTG ATTATCGCGG TGATTCTGGG CGGGATGACC GGCGTGTTTA CGCTGAGCGT GCTGGGCGGC GGTTTGGTTT CTCCTGCGTC TCCGGGCTCC ATTCTGGCGG TGCTGGCGAT GACGCCAAAA GGTGCTTACT TCGCTAACCT TGCGGCCATT GCGGCGGCCT TCGCGGTCTC CTTCATCGTG TCGGCGATTC TGCTGAAAAG CACCAAGCAA AAAGAAGAAG ACCTGAGCGA TGCAACGCGC CGCGTACAGG AAATGAAAGC GTCTGCGAAA GGTACGGCGG CGAGCGCTGG CGTCAGCGGC GATATGAGCA CCGTGCGTAA AATCATCGTA GCCTGTGACG CCGGTATGGG TTCCAGCGCG ATGGGAGCGG GTGTGCTGCG CAAGAAAGTG CAGGATGCCG GGCTGACCAA CATTTCGGTA ACCAATAGCG CGATCAACAG TCTGCCGGAC GATGTCGATC TGGTGATTAC GCACCGTGAC CTGACCGAGC GCGCGATGCG TCATGCGCCG CAGGCACAGC ATATTTCGCT GACCAACTTC CTTGATAGCG GCCTGTATAG CGACCTGGCA GCGCGTCTGG TGGCTGCGCA GGGTGCCGCG AAACCTGAAA CCGTAGCGAC GCCTGCACCG GCTGTAGCCG ATACGCAGAC GAACCTGTTC CAACTGGGGG CGGGTAATGT GTTCCTGAAT CAGCACGCGA CACACAAAGA GCAGGCAATC CGTTTCGCTG GTGAGCAACT GGTGAAAGGT GGCTACGTCG AGCCTGAGTA CGTTGAAGCG ATGCTGGAGC GTGAAAAGCT GACCTCTACT TATCTGGGCG AATCGATCGC GGTACCGCAC GGTACGATTG AAGCGAAAGA TCGCGTACTG AAAACGGGCG TGGTTTTCTG CCAGTACCCT GAAGGGGTTC GCTTTGGCGA TGAAGAAGAT GAGGTTGCAC GTCTGGTTAT CGGTATCGCT GCCCGTAACA ACGAACACAT TCAGGTCATC ACCAGCCTGA CCAACGCACT GGATGATGAC GCTGTCATTG AACGTCTGGC GCACACGCAG GATGTTCAGG AAGTACTCGA CTTACTCTCC GGTAAAAAGA GTGCCTAA
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Protein sequence | MLSPDIKIKV QNFGRFLSNM VMPNIGAFIA WGIITALFIP TGWIPNETLA KLVGPMITYL LPLLIGYTGG RLVFGERGGV VGAITTMGVI VGTDIPMFLG AMIVGPLGGW AIKRFDRVVD GKIKSGFEML VNNFSAGIIG MLLAILAFLA IGPLVEVFSQ VLASGVNLMV QNNLLPFTSI FVEPAKILFL NNAINHGIFS PLGIQQATET GKSIFFLIEA NPGPGMGVLM AYMFFGRGNA KESAPGAAII HFLGGIHEIY FPYVLMNPRL IIAVILGGMT GVFTLSVLGG GLVSPASPGS ILAVLAMTPK GAYFANLAAI AAAFAVSFIV SAILLKSTKQ KEEDLSDATR RVQEMKASAK GTAASAGVSG DMSTVRKIIV ACDAGMGSSA MGAGVLRKKV QDAGLTNISV TNSAINSLPD DVDLVITHRD LTERAMRHAP QAQHISLTNF LDSGLYSDLA ARLVAAQGAA KPETVATPAP AVADTQTNLF QLGAGNVFLN QHATHKEQAI RFAGEQLVKG GYVEPEYVEA MLEREKLTST YLGESIAVPH GTIEAKDRVL KTGVVFCQYP EGVRFGDEED EVARLVIGIA ARNNEHIQVI TSLTNALDDD AVIERLAHTQ DVQEVLDLLS GKKSA
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